View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_low_29 (Length: 224)
Name: NF4280_low_29
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 39092181 - 39091987
Alignment:
| Q |
16 |
atactatgagcatccataacgggagtatatggggtggatgtggctaattatctttacagtatgttaatccttcattaccttcaattgtcatttggtagta |
115 |
Q |
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| T |
39092181 |
atactatgagcatccataacgggagtatatggagtggatgtggctaattatctttacagtatgttgatccttcattaccttcaattgtcatttggtagta |
39092082 |
T |
|
| Q |
116 |
ctcatggctaactttacaagaaggg-attggcttggatcatttgattgtgtctgctagcaagaacattttatagaaatctatattaagtagataa |
209 |
Q |
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| T |
39092081 |
ctcatggctaactttacaagaagggtcctggcttggaccatttgattgtgtctgctagcaagaacattttatagaaatctatattaagtagataa |
39091987 |
T |
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