View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_low_3 (Length: 557)
Name: NF4280_low_3
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 548
Target Start/End: Original strand, 1726256 - 1726777
Alignment:
| Q |
17 |
tgattaatgctattagccattggatcaatccaaatgccgagtatggctggacagaactgcagagaatctgggttttcttttcaggttgcaaatgtgtgtg |
116 |
Q |
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| T |
1726256 |
tgattaatgctattagccattggatcaatccaaatgccgagtatggctggacagaactgcagagaatctgggttttcttttcaggttgcaaatgtgtgtg |
1726355 |
T |
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| Q |
117 |
tgnnnnnnnnnnnnnn----agagattgattgatcccacatacaaacctttttatgtttggctgctatctatattgtctgaggtcttaaggtaactaaat |
212 |
Q |
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| T |
1726356 |
tgtgtatgtatatatatataagagattgattgatcccacatacaaaccttttgatgtttggctgctat----attgtctgaggtcttaaggtaactaaat |
1726451 |
T |
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| Q |
213 |
tacgtatttgctttgtgtatttggtgttattgaaattgtgttcagtgataacttttagaactatttgtgatatgatccagnnnnnnnngggtacaacgac |
312 |
Q |
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| T |
1726452 |
tatgtatttgctttgtgtatttggtgttattgaaattgtgttcagtgataacttttagaactatttgtgatatgatccagttttttttgggtacaacgac |
1726551 |
T |
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| Q |
313 |
atgatcaaattttattgtaataattacttcaccaacaatgaataaaaagttattttgatcatttctaacatgtttttattattggatcaaaaagtcacat |
412 |
Q |
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| T |
1726552 |
atgatcaagttttattgtaataattacttcaccaacaatgaataaaaagttattttgatcatttctaacatgtttttattattggatcaaaaagtcacat |
1726651 |
T |
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| Q |
413 |
catgtttgatttaatgataagttttattgatttaatagtaaaaactaacttgcgcatgatgcaaaatttgtttcactactctttcacttgtgcaccat-a |
511 |
Q |
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| T |
1726652 |
catgtttgatttaatgataagttttattgattcaatactaaaaactaatttgcgcatgatgcaagatttg-----------tttcacttgtgcatcataa |
1726740 |
T |
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| Q |
512 |
aattgacttatctaacaagttttatgcaaagtattat |
548 |
Q |
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| T |
1726741 |
aattgacttatctaacaagttttacgcaaagtattat |
1726777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 481
Target Start/End: Complemental strand, 13004779 - 13004719
Alignment:
| Q |
421 |
atttaatgataagttttattgatttaatagtaaaaactaacttgcgcatgatgcaaaattt |
481 |
Q |
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| T |
13004779 |
atttaatggtaaggtttattgatttaatggtgaaaacaaacttgtgaatgatgcaaaattt |
13004719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 38406419 - 38406472
Alignment:
| Q |
425 |
aatgataagttttattgatttaatagtaaaaactaacttgcgcatgatgcaaaa |
478 |
Q |
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| T |
38406419 |
aatgataagatttattgattcaatagtaaaaacgaacttgtgtataatgcaaaa |
38406472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 37439781 - 37439849
Alignment:
| Q |
421 |
atttaatgataagttttattgatttaatagtaaaaactaacttgcgcatgatgcaaaatttgtttcact |
489 |
Q |
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| T |
37439781 |
atttaattataaaatttattgatttaatagtagaaactaacttatgtatgatgaaaaatatgtgtcact |
37439849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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