View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_low_32 (Length: 211)
Name: NF4280_low_32
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_low_32 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 9230844 - 9231044
Alignment:
| Q |
11 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9230844 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
9230943 |
T |
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| Q |
111 |
gaaggataaggattaaaacgaagaactacatcagataggtcgatatcaatggtgactcaatttctaaaaaatcatcgaacacgtgcacaagaaaattgtg |
210 |
Q |
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||||||||||| ||||||||||||||| | |||||| |||||||||||||||||||||| |||| |||| ||| ||| |||||||||||||||||||||| |
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| T |
9230944 |
gaaggataaggtttaaaacgaagaactccctcagatgggtcgatatcaatggtgactcattttccaaaatatcttcgcacacgtgcacaagaaaattgtg |
9231043 |
T |
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| Q |
211 |
t |
211 |
Q |
| |
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| T |
9231044 |
t |
9231044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 18351744 - 18351544
Alignment:
| Q |
11 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18351744 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
18351645 |
T |
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| Q |
111 |
gaaggataaggattaaaacgaagaactacatcagataggtcgatatcaatggtgactcaatttctaaaaaatcatcgaacacgtgcacaagaaaattgtg |
210 |
Q |
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| T |
18351644 |
gaaggataaggtttaaaacgaagaactccctcagatgggtcgatatcaatggtgactcattttccaaaatatcttcgcacacgtgcacaagaaaattgtg |
18351545 |
T |
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| Q |
211 |
t |
211 |
Q |
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| T |
18351544 |
t |
18351544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 2915168 - 2914970
Alignment:
| Q |
11 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |
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| T |
2915168 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagaaaagatgtg-ctgaacgagatatccgataacaagaa |
2915070 |
T |
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| Q |
111 |
gaaggataaggattaaaacgaagaactacatcagataggtcgatatcaatggtgactcaatttctaaaaaatcatcgaacacgtgcacaagaaaattgtg |
210 |
Q |
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||||||||||||||||||||||||||| | |||||| ||| | |||| ||||||||||| |||| |||| ||| ||| |||||||||||||||||||||| |
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| T |
2915069 |
gaaggataaggattaaaacgaagaactccctcagatgggttggtatc-atggtgactcattttccaaaatatcttcgcacacgtgcacaagaaaattgtg |
2914971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 21584900 - 21584860
Alignment:
| Q |
76 |
aagatgtgtctgaacgagatatccggtaacaagaagaagga |
116 |
Q |
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| T |
21584900 |
aagatatgtatgaacgagatatccagtaacaagaagaagga |
21584860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 7999283 - 7999479
Alignment:
| Q |
11 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
110 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
7999283 |
atcatcaaagatttgacttcttcgaactctttctgtaactcattagagaatcaagaaacaaagaaaagatttgtctaaacgagatatccggtaacaagaa |
7999382 |
T |
|
| Q |
111 |
gaaggataaggattaaaacgaagaactacatcagataggtcgatatcaatggtgactcaatttctaaaaaatcatcgaacacgtgcacaagaaaatt |
207 |
Q |
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|||||||||||| |||||||||||||| | |||||| ||| |||||||||||||||||| ||| |||| ||| ||| |||| ||| |||||||||| |
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| T |
7999383 |
gaaggataaggactaaaacgaagaactccctcagatgggtagatatcaatggtgactcatttttcaaaatatcttcgcacacatgctcaagaaaatt |
7999479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 2156 - 2043
Alignment:
| Q |
11 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
110 |
Q |
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||||||||||||||||| | |||||||||||||||||||||| || || ||| |||||||||| ||||||||| ||||||||||||| | |||||||| |
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| T |
2156 |
atcatcaaagatttgaccttttcgaactctgtctgtaactcactataggctcgggaaacaaagagaagatgtgtacgaacgagatatccagcaacaagaa |
2057 |
T |
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| Q |
111 |
gaaggataaggatt |
124 |
Q |
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|||||| ||||||| |
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| T |
2056 |
gaaggaaaaggatt |
2043 |
T |
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