View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_low_4 (Length: 507)
Name: NF4280_low_4
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 3522068 - 3522549
Alignment:
| Q |
18 |
aaaagggcaatagttggtttagctttagaggaggcaaaagtgcactatgatcctaaccttgccaatcctgaaaagataattgaatcgatagaagatgcgg |
117 |
Q |
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| T |
3522068 |
aaaagggcaatagttggtttagctttagaggaggcaaaagtgcactatgatcctaaccttgccaatcctgaaaagataattgaatcgatagaagatgcgg |
3522167 |
T |
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| Q |
118 |
gatttggagcagagcttattagctctgggaatgacgcaaataaagttcatcttaaagttgaagggattgattctgaagaagatgctaatgtcttggtgtc |
217 |
Q |
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| T |
3522168 |
gatttggagcagagcttattagctctgggaatgacgcaaataaagttcatcttaaagttgaagggattgattctgaagaagatgctaatgtcttggtgtc |
3522267 |
T |
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| Q |
218 |
ttatcttgagttagttgcgggtgtaaaccgtgttgaaattgacttttcagaacgtatagttacggttagctatgttcccgatattacaggtccgagaact |
317 |
Q |
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| T |
3522268 |
ttatcttgagttagttgcgggtgtaaaccgtgttgaaattgacttttcagaacgtatagttacggttagctatgttcccgatattacaggtccgagaact |
3522367 |
T |
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| Q |
318 |
ctcattcattgtgttcaagaagctagccgtggctccaaggtgtatcgagcaactttgtattctccttcggggcgaagagaaagggataaggttaatgaaa |
417 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522368 |
ctcattcaatgtgttcaagaagctagccgtggctccaaggtgtatcgagcaactttgtattctccttcggggcgaagagaaagggataaggttaatgaaa |
3522467 |
T |
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| Q |
418 |
ttcacatgtatagggatcagtttttgttaagctgcttgttttctgttcctgtttttgtgtttgccatggtgcttcctatgct |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3522468 |
ttcacatgtatagggatcagtttttgttaagctgcttgttttctgttcccgtttttgtgtttgccatggtgcttcctatgct |
3522549 |
T |
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