View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4280_low_7 (Length: 441)
Name: NF4280_low_7
Description: NF4280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4280_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 45 - 426
Target Start/End: Complemental strand, 7023776 - 7023393
Alignment:
| Q |
45 |
ttatagaccaaattagatatacaaaactataaattctcgtttaattttcctaattaaatttagtgaaaaaatagattcatatttcatattatctctcttt |
144 |
Q |
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| T |
7023776 |
ttatagaccaaattagatatacaaaactataaattctcgtttaattttcctaattaaatttagtgaaaaaatagattcatatttcatattatctctcttt |
7023677 |
T |
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| Q |
145 |
aaatttttattgctaatttaattttatctaatagtgtcagattgaaccataagcaagggattgctaatgacaaaataacgattaagtaagacgaacaaag |
244 |
Q |
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| T |
7023676 |
aaatttttattgctaatttaattttatctaa--gtgtcagattgaaccataagcaagggattgctaatgacaaaataacgattaagtaagatgaacaaag |
7023579 |
T |
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| Q |
245 |
tgacctggtttcaaaccctgactcatcatctatctctttatgagttttcaatgactattatattttgtctatctacaatannnnnnnaaggattaagtag |
344 |
Q |
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| T |
7023578 |
tgacatggtttcaaaccctgactcatcatctatctctttatgagttttcaatgactattatattttatctatctacaatatttttttaaggattaagtag |
7023479 |
T |
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| Q |
345 |
taaa----aattacctttgttcttcgtcactgtaattgtaacctttaattgttgcagcatttctgtatttgggcaaaggaacatga |
426 |
Q |
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| T |
7023478 |
taaaaattaattacctttgttcttcgtcactgtaattgtaacctttaattgttgcagcatttctgtatttgggcaaaggaacatga |
7023393 |
T |
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