View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4281-Insertion-10 (Length: 140)

Name: NF4281-Insertion-10
Description: NF4281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4281-Insertion-10
NF4281-Insertion-10
[»] chr1 (8 HSPs)
chr1 (5-140)||(43044943-43045078)
chr1 (5-140)||(43066913-43067048)
chr1 (5-140)||(43083787-43083922)
chr1 (5-137)||(3300677-3300809)
chr1 (5-134)||(43076774-43076903)
chr1 (5-137)||(38138065-38138197)
chr1 (7-82)||(50912324-50912399)
chr1 (5-80)||(45983958-45984033)
[»] chr4 (1 HSPs)
chr4 (5-140)||(4231408-4231543)
[»] chr6 (2 HSPs)
chr6 (5-140)||(7519924-7520059)
chr6 (5-140)||(7529461-7529596)
[»] chr7 (1 HSPs)
chr7 (7-111)||(39242500-39242604)
[»] chr2 (4 HSPs)
chr2 (5-100)||(33860784-33860879)
chr2 (9-135)||(34690793-34690919)
chr2 (9-135)||(34713205-34713331)
chr2 (10-135)||(16232135-16232260)
[»] chr8 (1 HSPs)
chr8 (9-100)||(4619636-4619727)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 1e-54; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 43044943 - 43045078
Alignment:
Q  5 ccttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaacctt 104  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||| |||||| || ||||||||||||||||||||||||||| |||||||||||||||    
T  43044943 ccttgtaccagtcaaggtttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaacctt 43045042  T
Q  105 cttcaaataggatgaaacttccttcacaatttcatc 140  Q
    ||||||||||||||||||||||||||||||||||||    
T  43045043 cttcaaataggatgaaacttccttcacaatttcatc 43045078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 43067048 - 43066913
Alignment:
Q  5 ccttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaacctt 104  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||| |||||| || ||||||||||||||||||||||||||| |||||||||||||||    
T  43067048 ccttgtaccagtcaaggtttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaacctt 43066949  T
Q  105 cttcaaataggatgaaacttccttcacaatttcatc 140  Q
    ||||||||||||||||||||||||||||||||||||    
T  43066948 cttcaaataggatgaaacttccttcacaatttcatc 43066913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 43083787 - 43083922
Alignment:
Q  5 ccttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaacctt 104  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||| |||||| || ||||||||||||||||||||||||||| |||||||||||||||    
T  43083787 ccttgtaccagtcaaggtttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaacctt 43083886  T
Q  105 cttcaaataggatgaaacttccttcacaatttcatc 140  Q
    ||||||||||||||||||||||||||||||||||||    
T  43083887 cttcaaataggatgaaacttccttcacaatttcatc 43083922  T

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Target: chr1; HSP #4
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 3300677 - 3300809
Alignment:
Q  5 ccttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaacctt 104  Q
    |||||||||||||||| |||| ||||||||||| |||||| ||||| |||||| || ||||||||||||||||||||||||||| |||||||||||||||    
T  3300677 ccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaacctt 3300776  T
Q  105 cttcaaataggatgaaacttccttcacaatttc 137  Q
    |||||||||||||||||||||||||||||||||    
T  3300777 cttcaaataggatgaaacttccttcacaatttc 3300809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 43076903 - 43076774
Alignment:
Q  5 ccttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaacctt 104  Q
    |||||||||||| |||||||| ||||||||||| |||||| ||||| |||||| || ||||||||||||||||||| || |||| |||||||||||||||    
T  43076903 ccttgtaccagttaaggtttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaatgttttctgggttatagccaacctt 43076804  T
Q  105 cttcaaataggatgaaacttccttcacaat 134  Q
    ||||||||||||||||||||||| ||||||    
T  43076803 cttcaaataggatgaaacttcctccacaat 43076774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 38138197 - 38138065
Alignment:
Q  5 ccttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaacctt 104  Q
    |||| |||||||||||||| | |||||| || |  ||||| ||||| |||||| || |||||||||||||||||||||  |||  |||||||||||| |     
T  38138197 ccttataccagtcaaggttagtagagcgttcaatgatgttatctccctcaaaaccagagatgggaacaaatggaatttcatctaggttatagccaacatc 38138098  T
Q  105 cttcaaataggatgaaacttccttcacaatttc 137  Q
      ||||| ||| ||||| |||||||||||||||    
T  38138097 aatcaaaaagggtgaaaattccttcacaatttc 38138065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 50912324 - 50912399
Alignment:
Q  7 ttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattt 82  Q
    ||||||||||||||||| | ||||||||| |  ||||| ||||| |||||| || ||||||||| ||| |||||||    
T  50912324 ttgtaccagtcaaggttagtagagcgctcaatgatgttatctccctcaaaaccagagatgggaataaacggaattt 50912399  T

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Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 45984033 - 45983958
Alignment:
Q  5 ccttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaat 80  Q
    |||||||||| ||||| || | ||||||||| | || ||| ||||| |||||| || |||||||||||| ||||||    
T  45984033 ccttgtaccaatcaagattagtagagcgctcaatcaagttatctccctcaaaaccagagatgggaacaattggaat 45983958  T

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Target: chr4 (Bit Score: 84; Significance: 3e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 4231408 - 4231543
Alignment:
Q  5 ccttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaacctt 104  Q
    |||||||||||||||| |||| ||||||||| | |||||| ||||| |||||| || |||||||||||||||||||||| |||| |||||||||||||||    
T  4231408 ccttgtaccagtcaagatttgtagagcgctcaatcatgttatctccctcaaaaccagagatgggaacaaatggaattttatctgggttatagccaacctt 4231507  T
Q  105 cttcaaataggatgaaacttccttcacaatttcatc 140  Q
    |||||  |||||||| ||||||||||||||||||||    
T  4231508 cttcatgtaggatgatacttccttcacaatttcatc 4231543  T

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Target: chr6 (Bit Score: 72; Significance: 4e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 7520059 - 7519924
Alignment:
Q  5 ccttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaacctt 104  Q
    ||||||||||||||||||| | ||| | ||| | ||||||||| ||||||||| || |||| ||||||||||| |||||||||| ||| || ||||||||    
T  7520059 ccttgtaccagtcaaggttggtagacctctcaatcatgttgtcaccttcaaaaccagagattggaacaaatgggattttgtctgggttgtaaccaacctt 7519960  T
Q  105 cttcaaataggatgaaacttccttcacaatttcatc 140  Q
    |||||| |||||||||||||||||||| ||||||||    
T  7519959 cttcaagtaggatgaaacttccttcacgatttcatc 7519924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 7529596 - 7529461
Alignment:
Q  5 ccttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaacctt 104  Q
    ||||||||||||||||||| |  || | ||| | ||||||||| ||||||||  |  |||||||||||||||| |||||||| | ||| || ||||||||    
T  7529596 ccttgtaccagtcaaggttggtggacctctcaatcatgttgtcaccttcaaatccggagatgggaacaaatgggattttgtcagggttgtaaccaacctt 7529497  T
Q  105 cttcaaataggatgaaacttccttcacaatttcatc 140  Q
    |||||| |||||||||||||||||||| ||||||||    
T  7529496 cttcaagtaggatgaaacttccttcacgatttcatc 7529461  T

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Target: chr7 (Bit Score: 45; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 39242604 - 39242500
Alignment:
Q  7 ttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaaccttct 106  Q
    |||||||||||||  || | ||||||||| | || ||| ||||| | |||| || |||||||||||||| || ||||||||| |||||||||||||||||    
T  39242604 ttgtaccagtcaatattagtagagcgctcaatcaagttatctccgttaaaaccagagatgggaacaaatcgagttttgtctgggttatagccaaccttct 39242505  T
Q  107 tcaaa 111  Q
    |||||    
T  39242504 tcaaa 39242500  T

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Target: chr2 (Bit Score: 44; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 33860784 - 33860879
Alignment:
Q  5 ccttgtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaa 100  Q
    |||||||||||||||| || | ||||||||| | || ||| ||||| |||||| || |||||||||||||||||| |||||||  |||||||||||    
T  33860784 ccttgtaccagtcaagattagtagagcgctcaatcaagttatctccctcaaaaccagagatgggaacaaatggaactttgtctaggttatagccaa 33860879  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 34690793 - 34690919
Alignment:
Q  9 gtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaaccttcttc 108  Q
    ||||||||||||||| |  |||||||| |  ||||| ||||| | | || || |||||||||||||||||||||| |||| |||||| |||| | || ||    
T  34690793 gtaccagtcaaggttagtcgagcgctcaatgatgttatctcccttataaccagagatgggaacaaatggaattttatctgtgttataaccaatcctcatc 34690892  T
Q  109 aaataggatgaaacttccttcacaatt 135  Q
    |||  || ||||| | |||||||||||    
T  34690893 aaagcgggtgaaattcccttcacaatt 34690919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 34713205 - 34713331
Alignment:
Q  9 gtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaaccttcttc 108  Q
    ||||||||||||||| |  |||||||| |  ||||| ||||| | | || || |||||||||||||||||||||| |||| |||||| |||| | || ||    
T  34713205 gtaccagtcaaggttagtcgagcgctcaatgatgttatctcccttataaccagagatgggaacaaatggaattttatctgtgttataaccaatcctcatc 34713304  T
Q  109 aaataggatgaaacttccttcacaatt 135  Q
    |||  || ||||| | |||||||||||    
T  34713305 aaagcgggtgaaattcccttcacaatt 34713331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 16232135 - 16232260
Alignment:
Q  10 taccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaaccttcttca 109  Q
    |||||||||||||| | ||||||||| |  ||||| ||||  | |||| || ||||||||||||||||||| |  || | |||||| |||| | || |||    
T  16232135 taccagtcaaggttagtagagcgctcaacgatgttatctcacttaaaaccagagatgggaacaaatggaatatcatcagcgttataaccaatcctcgtca 16232234  T
Q  110 aataggatgaaacttccttcacaatt 135  Q
    ||  || ||||||| |||||||||||    
T  16232235 aagcgggtgaaactcccttcacaatt 16232260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 4619636 - 4619727
Alignment:
Q  9 gtaccagtcaaggtttgcagagcgctcgaacatgttgtctccttcaaaatcaaagatgggaacaaatggaattttgtctgagttatagccaa 100  Q
    |||||||||||| || | ||| ||||| | || ||| ||||| |||||| || ||||||||||||||| |||||| |  | |||||||||||    
T  4619636 gtaccagtcaagattagaagaacgctcaatcaagttatctccctcaaaaccagagatgggaacaaatgtaatttttttagggttatagccaa 4619727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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