View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4281-Insertion-11 (Length: 151)
Name: NF4281-Insertion-11
Description: NF4281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4281-Insertion-11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 7e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 7e-78
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 31648788 - 31648638
Alignment:
| Q |
1 |
agaactttccattttcataaccttttcaatgattggctccaaatccaataaggtgcaattttgttctccttgatactccaccatgaatctaagtagttgt |
100 |
Q |
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| T |
31648788 |
agaactttccattttcaaaaccttttcaatgattggctccaaatccaataaggtgcaattttgttctccttgatactccaccatgaatctaagtagttgt |
31648689 |
T |
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| Q |
101 |
tcctttgacatgtgattctcaccatttgcaaacttggaaaaagcttcctta |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31648688 |
tcctttgacatgtgattctcaccatttgcaaacttggaaaaagcttcctta |
31648638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 31700660 - 31700510
Alignment:
| Q |
1 |
agaactttccattttcataaccttttcaatgattggctccaaatccaataaggtgcaattttgttctccttgatactccaccatgaatctaagtagttgt |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31700660 |
agaactttccattttcaaaaccttttcaatgattggctccaaatccaataaggtgcaattttgctctccttgatactccaccatgaatctaagtagttgt |
31700561 |
T |
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| Q |
101 |
tcctttgacatgtgattctcaccatttgcaaacttggaaaaagcttcctta |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31700560 |
tcctttgacatgtgattctcaccatttgcaaacttggaaaaagcttcctta |
31700510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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