View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4281-Insertion-9 (Length: 98)
Name: NF4281-Insertion-9
Description: NF4281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4281-Insertion-9 |
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| [»] scaffold0010 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0010 (Bit Score: 92; Significance: 3e-45; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 92; E-Value: 3e-45
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 250982 - 251077
Alignment:
| Q |
3 |
tacctcatccaataaaggttcctatccaccatctcttagagcttgtaatcgctcctttgtgatgttaaccaggttcataacattgatgatatcttg |
98 |
Q |
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| T |
250982 |
tacctcatccaataaaggttcctatccatcatctcttagagcttgtaatcgctcctttgtgatgttaaccaggttcataacattgatgatatcttg |
251077 |
T |
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Target: chr4 (Bit Score: 60; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 41500702 - 41500797
Alignment:
| Q |
3 |
tacctcatccaataaaggttcctatccaccatctcttagagcttgtaatcgctcctttgtgatgttaaccaggttcataacattgatgatatcttg |
98 |
Q |
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| T |
41500702 |
tacctcctccaataaaggttcccatccatcatctcttagagcttgtaatcgctcctttgtgatgctaattaggttcatagcattgacgatgtcttg |
41500797 |
T |
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Target: chr5 (Bit Score: 58; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 6e-25
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 29638269 - 29638184
Alignment:
| Q |
3 |
tacctcatccaataaaggttcctatccaccatctcttagagcttgtaatcgctcctttgtgatgttaaccaggttcataacattga |
88 |
Q |
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| T |
29638269 |
tacctcctccaataaaggttcccatccatcatctcttaaagcttgtaatcgctcctttgtgatgctaactaggttcatagcattga |
29638184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 6e-25
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 676289 - 676374
Alignment:
| Q |
3 |
tacctcatccaataaaggttcctatccaccatctcttagagcttgtaatcgctcctttgtgatgttaaccaggttcataacattga |
88 |
Q |
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| T |
676289 |
tacctcctccaataaaggttcccatccatcatctcttaaagcttgtaatcgctcctttgtgatgctaactaggttcatagcattga |
676374 |
T |
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Target: chr1 (Bit Score: 56; Significance: 9e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 9e-24
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 4815653 - 4815558
Alignment:
| Q |
3 |
tacctcatccaataaaggttcctatccaccatctcttagagcttgtaatcgctcctttgtgatgttaaccaggttcataacattgatgatatcttg |
98 |
Q |
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| T |
4815653 |
tacctcctccaataaaggttcccatccatcatctcttagagcttgtaatcgctcctttttgatgctaattaggttcatagcattgacgatgtcttg |
4815558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 13392795 - 13392701
Alignment:
| Q |
3 |
tacctcatccaataaaggttcctatccaccatctcttagagcttgtaatcgctcctttgtgatgttaaccaggttcataacattgatgatatctt |
97 |
Q |
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| T |
13392795 |
tacctcttccaataaacattctcatccatcatctctttgagtttgtaattgcttctttgtgatgttaaccaagttcataacattgacgatgtctt |
13392701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 23599889 - 23599794
Alignment:
| Q |
3 |
tacctcatccaataaaggttcctatccaccatctcttagagcttgtaatcgctcctttgtgatgttaaccaggttcataacattgatgatatcttg |
98 |
Q |
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| T |
23599889 |
tacctcatccaataaaggttctcattcatcatctcttagagtttgtaacaactcttttgtaatgttaaccaaattcatagcattgacgatgtcttg |
23599794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 12158713 - 12158625
Alignment:
| Q |
10 |
tccaataaaggttcctatccaccatctcttagagcttgtaatcgctcctttgtgatgttaaccaggttcataacattgatgatatcttg |
98 |
Q |
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|||||||||||||| || || |||||||||||| ||||||| |||| ||||||||||||| || ||||||| |||||| ||| ||||| |
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| T |
12158713 |
tccaataaaggttctcattcatcatctcttagagtttgtaattgctcatttgtgatgttaatcaagttcatagcattgacgatgtcttg |
12158625 |
T |
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