View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4281_high_11 (Length: 240)

Name: NF4281_high_11
Description: NF4281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4281_high_11
NF4281_high_11
[»] chr1 (22 HSPs)
chr1 (60-225)||(50824867-50825031)
chr1 (60-116)||(33358047-33358103)
chr1 (60-117)||(15015524-15015580)
chr1 (60-116)||(29147762-29147819)
chr1 (60-116)||(29154904-29154960)
chr1 (80-116)||(46543332-46543368)
chr1 (60-116)||(47721535-47721591)
chr1 (60-116)||(47728527-47728583)
chr1 (60-116)||(50328030-50328086)
chr1 (61-116)||(15704951-15705006)
chr1 (61-116)||(50881999-50882054)
chr1 (76-116)||(4608301-4608341)
chr1 (60-116)||(8200201-8200257)
chr1 (60-116)||(8447862-8447918)
chr1 (60-116)||(10889935-10889991)
chr1 (60-116)||(13489788-13489844)
chr1 (65-113)||(23621373-23621421)
chr1 (65-113)||(23738152-23738200)
chr1 (60-116)||(34254240-34254296)
chr1 (60-116)||(35136970-35137026)
chr1 (60-116)||(45383858-45383914)
chr1 (60-116)||(48326094-48326149)
[»] chr3 (10 HSPs)
chr3 (60-114)||(52937309-52937363)
chr3 (60-108)||(18741242-18741290)
chr3 (60-116)||(6999296-6999352)
chr3 (62-116)||(23183541-23183595)
chr3 (60-116)||(37411001-37411057)
chr3 (60-116)||(51465803-51465859)
chr3 (61-116)||(3953364-3953419)
chr3 (60-116)||(36412249-36412306)
chr3 (60-113)||(46019588-46019641)
chr3 (60-116)||(46852021-46852077)
[»] chr8 (11 HSPs)
chr8 (60-116)||(30439395-30439451)
chr8 (60-116)||(36885377-36885433)
chr8 (60-120)||(23792975-23793035)
chr8 (60-116)||(45508659-45508715)
chr8 (60-114)||(14707234-14707288)
chr8 (60-114)||(45519682-45519736)
chr8 (60-116)||(12707276-12707332)
chr8 (60-116)||(31597074-31597130)
chr8 (60-115)||(36568087-36568142)
chr8 (61-116)||(42569618-42569673)
chr8 (61-111)||(3441305-3441355)
[»] chr2 (21 HSPs)
chr2 (60-112)||(11091252-11091304)
chr2 (60-116)||(36643973-36644029)
chr2 (60-116)||(4023239-4023295)
chr2 (60-116)||(23352796-23352852)
chr2 (60-116)||(32869952-32870008)
chr2 (62-116)||(3012741-3012795)
chr2 (60-114)||(13347705-13347759)
chr2 (60-114)||(22525887-22525941)
chr2 (61-114)||(36211951-36212004)
chr2 (60-116)||(10711850-10711906)
chr2 (60-116)||(13765526-13765582)
chr2 (60-110)||(11167413-11167463)
chr2 (60-113)||(7574561-7574614)
chr2 (60-117)||(25881670-25881727)
chr2 (60-113)||(28245853-28245906)
chr2 (60-117)||(37105764-37105821)
chr2 (60-113)||(41586560-41586613)
chr2 (60-116)||(15269987-15270043)
chr2 (60-116)||(34119541-34119597)
chr2 (60-116)||(35589276-35589332)
chr2 (60-116)||(40936953-40937009)
[»] chr6 (10 HSPs)
chr6 (60-114)||(1369486-1369540)
chr6 (60-116)||(754327-754383)
chr6 (60-116)||(6531069-6531125)
chr6 (61-111)||(5028160-5028210)
chr6 (60-116)||(3832589-3832645)
chr6 (60-116)||(13143271-13143327)
chr6 (60-116)||(18141190-18141246)
chr6 (61-113)||(32046825-32046877)
chr6 (66-111)||(6856057-6856102)
chr6 (60-116)||(35213450-35213506)
[»] chr7 (8 HSPs)
chr7 (60-116)||(7817762-7817818)
chr7 (61-116)||(43573432-43573487)
chr7 (61-114)||(42555691-42555744)
chr7 (60-116)||(11352863-11352919)
chr7 (60-116)||(41894041-41894097)
chr7 (60-117)||(10055520-10055577)
chr7 (60-116)||(28036870-28036926)
chr7 (60-112)||(47500734-47500786)
[»] chr5 (11 HSPs)
chr5 (60-116)||(34270453-34270509)
chr5 (60-116)||(41175595-41175651)
chr5 (60-114)||(15952936-15952990)
chr5 (60-112)||(1839238-1839290)
chr5 (60-116)||(8675322-8675378)
chr5 (60-116)||(10649561-10649617)
chr5 (60-116)||(15478784-15478840)
chr5 (60-116)||(43441864-43441920)
chr5 (60-116)||(19481071-19481127)
chr5 (60-112)||(19839879-19839931)
chr5 (60-116)||(34124747-34124803)
[»] chr4 (16 HSPs)
chr4 (60-116)||(39344869-39344925)
chr4 (60-116)||(47099146-47099202)
chr4 (80-117)||(13139293-13139330)
chr4 (60-117)||(26718494-26718551)
chr4 (60-117)||(26731122-26731179)
chr4 (60-116)||(12138979-12139035)
chr4 (60-116)||(17683467-17683523)
chr4 (60-116)||(22819775-22819831)
chr4 (60-116)||(43769837-43769893)
chr4 (65-112)||(32696681-32696728)
chr4 (60-107)||(49896564-49896611)
chr4 (60-114)||(46405865-46405919)
chr4 (60-116)||(53654638-53654695)
chr4 (60-116)||(1815890-1815946)
chr4 (60-116)||(31657772-31657828)
chr4 (60-116)||(32696307-32696363)
[»] scaffold0532 (1 HSPs)
scaffold0532 (60-116)||(11090-11146)
[»] scaffold0141 (1 HSPs)
scaffold0141 (60-116)||(12058-12114)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 50824867 - 50825031
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactccttcaattaaaatcatatgttagaagttaaatatagaggcacaat 159  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  50824867 gtaaattatggttgtatcataagttgtccaccaaatggttgttcaaataacactcctctaattaaaatcatatgttagaagttaaatatagaggcacaat 50824966  T
Q  160 ttttctagtatgttgagtgattggattgacttcaatctttatgaacatattggttagagtaaagca 225  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  50824967 ttttctagtatattgagtgattggattgactt-aatcttcatgaacatattggttagagtaaagca 50825031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 33358103 - 33358047
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| || || ||||||||||||||||||||||||||||    
T  33358103 gtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcct 33358047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 15015524 - 15015580
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcctt 117  Q
    |||||||||||||||  ||||| ||||| ||||||| |||||||||||||||||||||    
T  15015524 gtaaattatggttgtcccataa-ttatcaaccaaatagttgttcaaataacactcctt 15015580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 29147819 - 29147762
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaa-tggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||||||||| |||||| || |||||||||||||||||||    
T  29147819 gtaaattatggttgtcacataaattatcaaccaaattgattgttcaaataacactcct 29147762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 29154904 - 29154960
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||| |||||  ||||| || || ||||||||||||||||||||||||||||    
T  29154904 gtaaattatcgttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 29154960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 46543368 - 46543332
Alignment:
Q  80 aaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||| ||||||||||||||||||||||||||||    
T  46543368 aaattatcaaccaaatggttgttcaaataacactcct 46543332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 47721535 - 47721591
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| || ||||| ||||||||||| |||||||||||||    
T  47721535 gtaaattatggttgtcccataagttgtccactaaatggttgtttaaataacactcct 47721591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 47728527 - 47728583
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| || ||||| ||||||||||| |||||||||||||    
T  47728527 gtaaattatggttgtcccataagttgtccactaaatggttgtttaaataacactcct 47728583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 50328086 - 50328030
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  50328086 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 50328030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 15705006 - 15704951
Alignment:
Q  61 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||||||||   | || ||||| ||||||||||||||||||||||||||||    
T  15705006 taaattatggttgtcctaaaagttatcaaccaaatggttgttcaaataacactcct 15704951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 50882054 - 50881999
Alignment:
Q  61 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||| ||||  |||||||| || | ||||||||||||||||||||||||||    
T  50882054 taaattatgattgtcacataaattgtcaatcaaatggttgttcaaataacactcct 50881999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 4608301 - 4608341
Alignment:
Q  76 tcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||| ||| || ||||||||||||||||||||||||||||    
T  4608301 tcatagattgtcaaccaaatggttgttcaaataacactcct 4608341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 8200201 - 8200257
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| || || |||||| || ||||||||||||||||||    
T  8200201 gtaaattatggttgtcccataagttgtcaaccaaaaggctgttcaaataacactcct 8200257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 8447862 - 8447918
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||| ||||  ||||| ||||| || ||||| |||||||||||||||||||    
T  8447862 gtaaattatgattgtcacataagttatcaactaaatgattgttcaaataacactcct 8447918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 10889991 - 10889935
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||| ||||||||||||||||||||    
T  10889991 gtaaattatggttgtcacaaaagttgtcaaccaaatagttgttcaaataacactcct 10889935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 13489788 - 13489844
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||| ||||||||||||||||||||    
T  13489788 gtaaattatggttgtcccagaagttgtcaaccaaatagttgttcaaataacactcct 13489844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 23621421 - 23621373
Alignment:
Q  65 ttatggttgtatcataaattatccaccaaatggttgttcaaataacact 113  Q
    ||||||||||| ||||| || || | |||||||||||||||||||||||    
T  23621421 ttatggttgtaccataagttgtcaatcaaatggttgttcaaataacact 23621373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 23738200 - 23738152
Alignment:
Q  65 ttatggttgtatcataaattatccaccaaatggttgttcaaataacact 113  Q
    ||||||||||| ||||| || || | |||||||||||||||||||||||    
T  23738200 ttatggttgtaccataagttgtcaatcaaatggttgttcaaataacact 23738152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 34254296 - 34254240
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||| |||||  || || ||||| |||||||| |||||||||||||||||||    
T  34254296 gtaaattatagttgtcccaaaagttatcaaccaaatgattgttcaaataacactcct 34254240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 35136970 - 35137026
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||   | ||||| || |||||||| |||||||||||||||||||    
T  35136970 gtaaattatggttgtcctaaaaattgtcaaccaaatgattgttcaaataacactcct 35137026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 45383914 - 45383858
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||| || | |||||| ||||| || ||||||||||||||| |||||||||    
T  45383914 gtaaattatgattatttcataagttatcaactaaatggttgttcaaacaacactcct 45383858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 48326094 - 48326149
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  48326094 gtaaattatggttgtc-caaaagttgtcaaccaaatggttgttcaaataacactcct 48326149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 52937309 - 52937363
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 114  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  52937309 gtaaattatggttgtctcaaaaattatcaaccaaatggttgttcaaataacactc 52937363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 18741242 - 18741290
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaata 108  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  18741242 gtaaattatggttgtcccataaattatccaccaaatggttgttcaaata 18741290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 6999296 - 6999352
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| || || ||||||||||||||||||||||||||||    
T  6999296 gtaaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 6999352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 23183541 - 23183595
Alignment:
Q  62 aaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||||||||| |||| || || | ||||||||||||||||||||||||||    
T  23183541 aaattatggttgtataataagttgtcaatcaaatggttgttcaaataacactcct 23183595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 37411001 - 37411057
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||||||||| |||||  || || || |||||||||||||||||||||||||    
T  37411001 gtaaattatggttgtttcataggttgtcaactaaatggttgttcaaataacactcct 37411057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 51465859 - 51465803
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  51465859 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 51465803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 3953419 - 3953364
Alignment:
Q  61 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||| |||| ||| ||||| || |||||||| |||||||||||||||||||    
T  3953419 taaattatgattgtctcaaaaattgtcaaccaaatgattgttcaaataacactcct 3953364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 36412249 - 36412306
Alignment:
Q  60 gtaaattatggttgtatcataaattatcca-ccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| || || | |||||||||||||||||||||||||||    
T  36412249 gtaaattatggttgtcccataagttgtcaaaccaaatggttgttcaaataacactcct 36412306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 46019588 - 46019641
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacact 113  Q
    |||||||||||||||  || || || || |||||||||||||||||||||||||    
T  46019588 gtaaattatggttgttccaaaagttgtcaaccaaatggttgttcaaataacact 46019641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 46852077 - 46852021
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||| ||||  || || || || ||||||||||||||||||||||||||||    
T  46852077 gtaaattatgattgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 46852021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 30439451 - 30439395
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| ||||| ||||||||||||||||||||||||||||    
T  30439451 gtaaattatggttgtcacataagttatcaaccaaatggttgttcaaataacactcct 30439395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 36885433 - 36885377
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| || |||||||||||||||||||||||||||||||    
T  36885433 gtaaattatggttgtcccataagttgtccaccaaatggttgttcaaataacactcct 36885377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 23793035 - 23792975
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactccttcaa 120  Q
    ||||||||| ||||| ||||||||| || |||||||||||||| ||||||||| |||||||    
T  23793035 gtaaattatagttgtctcataaattgtcaaccaaatggttgttgaaataacaccccttcaa 23792975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 45508659 - 45508715
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||||||||| || |||| ||||||||||||||||||||    
T  45508659 gtaaattatggttgtcccataaattatcaactaaattgttgttcaaataacactcct 45508715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 14707288 - 14707234
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 114  Q
    |||||||||| |||| |||||| || |||||||||| ||||||||||||||||||    
T  14707288 gtaaattatgattgtctcataagttgtccaccaaatagttgttcaaataacactc 14707234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 45519682 - 45519736
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 114  Q
    ||||||||||||| | ||||| ||| || ||||||||||||||||||||||||||    
T  45519682 gtaaattatggttatctcatacattgtcaaccaaatggttgttcaaataacactc 45519736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 12707276 - 12707332
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| |  || ||||||||||||||||||||||||||||    
T  12707276 gtaaattatggttgtcccataagtgctcaaccaaatggttgttcaaataacactcct 12707332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 31597074 - 31597130
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||| |||| ||| || ||||| | ||||||||||||||||||||||||||    
T  31597074 gtaaattatgattgtctcaaaagttatcaatcaaatggttgttcaaataacactcct 31597130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 36568087 - 36568142
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcc 115  Q
    |||||||||||||||  ||||| || || | |||||||||||||||||||||||||    
T  36568087 gtaaattatggttgtcccataagttgtcaatcaaatggttgttcaaataacactcc 36568142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 42569673 - 42569618
Alignment:
Q  61 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||||||||   | |||||||| ||||||||||||||||||||| ||||||    
T  42569673 taaattatggttgtcctaaaaattatcaaccaaatggttgttcaaataatactcct 42569618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 3441305 - 3441355
Alignment:
Q  61 taaattatggttgtatcataaattatccaccaaatggttgttcaaataaca 111  Q
    ||||||||||||||  ||||||||||| || |||| |||||||||||||||    
T  3441305 taaattatggttgtcccataaattatcaactaaatagttgttcaaataaca 3441355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 11091304 - 11091252
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacac 112  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  11091304 gtaaattatggttgtctcataaattatcaaccaaattgttgttcaaataacac 11091252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 36644029 - 36643973
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  |||||||| || ||||||||||||||||||||||||||||    
T  36644029 gtaaattatggttgtcccataaattgtcaaccaaatggttgttcaaataacactcct 36643973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 4023295 - 4023239
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||| |||| ||||||||| || |||||||||||||| |||||||||||||    
T  4023295 gtaaattatgattgtctcataaattgtcaaccaaatggttgttgaaataacactcct 4023239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 23352852 - 23352796
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| || || ||||||||||||||||||||||||||||    
T  23352852 gtaaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 23352796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 32869952 - 32870008
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || ||||| || ||||||||||||||||||||||||||||    
T  32869952 gtaaattatggttgtcccaaaaattgtcaaccaaatggttgttcaaataacactcct 32870008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 3012795 - 3012741
Alignment:
Q  62 aaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||  ||||| || || ||||||||||||||||||||||||||||    
T  3012795 aaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 3012741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 13347759 - 13347705
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 114  Q
    |||||||||||||||  || ||||| || ||||||||||||||||||||||||||    
T  13347759 gtaaattatggttgtcccaaaaattgtcaaccaaatggttgttcaaataacactc 13347705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 22525941 - 22525887
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 114  Q
    ||||||||||||||| ||| || ||||| | ||||||||||||||||||||||||    
T  22525941 gtaaattatggttgtctcaaaagttatcaatcaaatggttgttcaaataacactc 22525887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 36212004 - 36211951
Alignment:
Q  61 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 114  Q
    ||||||||| ||||  ||||| ||||| ||||||||||||||||||||||||||    
T  36212004 taaattatgattgtcacataatttatcaaccaaatggttgttcaaataacactc 36211951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 10711850 - 10711906
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||| |||| ||| || ||||| ||||||| ||||||||||||||||||||    
T  10711850 gtaaattatgattgtttcaaaagttatcaaccaaatagttgttcaaataacactcct 10711906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 13765526 - 13765582
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  13765526 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 13765582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 11167463 - 11167413
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataac 110  Q
    |||||||||||||||  ||||| ||||| | ||||||||||||||||||||    
T  11167463 gtaaattatggttgttacataagttatcaagcaaatggttgttcaaataac 11167413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 7574561 - 7574614
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacact 113  Q
    ||||||||| |||||  || ||||| || |||||||||||||||||||||||||    
T  7574561 gtaaattatagttgttccaaaaattgtcaaccaaatggttgttcaaataacact 7574614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 25881670 - 25881727
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcctt 117  Q
    ||||||||||| ||| ||| || || || ||||||||||||||||||||| |||||||    
T  25881670 gtaaattatggctgtttcaaaagttgtcaaccaaatggttgttcaaataagactcctt 25881727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 28245853 - 28245906
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacact 113  Q
    |||||||| |||||| ||| || || || |||||||||||||||||||||||||    
T  28245853 gtaaattaaggttgtttcaaaagttgtcaaccaaatggttgttcaaataacact 28245906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 37105764 - 37105821
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcctt 117  Q
    |||||||||||||||  || || || || ||||||| |||||||||||||||||||||    
T  37105764 gtaaattatggttgtcacaaaagttgtcaaccaaatagttgttcaaataacactcctt 37105821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 41586613 - 41586560
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacact 113  Q
    |||||||||||||||  ||||| || || || ||||||||||||||||||||||    
T  41586613 gtaaattatggttgttccataagttgtcaactaaatggttgttcaaataacact 41586560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 15269987 - 15270043
Alignment:
Q  60 gtaaattatggttgtatcataaa--ttatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||  ||||||||  ||||| ||||||||| ||||||||||||||||||    
T  15269987 gtaaattatggtt--atcataaaagttatcaaccaaatggatgttcaaataacactcct 15270043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 34119597 - 34119541
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||||  ||| |||||| || || ||||||||||||||||||| ||||||||    
T  34119597 gtaaattatgagtgtctcataagttgtcaaccaaatggttgttcaaattacactcct 34119541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 35589332 - 35589276
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || |||||||| || |||| |||||| |||||||||||||    
T  35589332 gtaaattatggttgtcccaaaaattatcaactaaatagttgtttaaataacactcct 35589276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 40937009 - 40936953
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  |||||||| ||  | |||||||| ||||||||||||||||    
T  40937009 gtaaattatggttgtcacataaattgtcagctaaatggttattcaaataacactcct 40936953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 1369486 - 1369540
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 114  Q
    ||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||    
T  1369486 gtaaattatggttgtctcaaaaattgtcaaccaaatggttgttcaaataacactc 1369540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 754383 - 754327
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || ||||| || ||||||||||||||||||||||||||||    
T  754383 gtaaattatggttgttccaaaaattgtcaaccaaatggttgttcaaataacactcct 754327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 6531125 - 6531069
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||| | ||||| ||||||||||||||||||||||||||||    
T  6531125 gtaaattatggttgtcccattagttatcaaccaaatggttgttcaaataacactcct 6531069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 5028210 - 5028160
Alignment:
Q  61 taaattatggttgtatcataaattatccaccaaatggttgttcaaataaca 111  Q
    |||||||||||||| |||||| ||||| |||||||| ||||||||||||||    
T  5028210 taaattatggttgtctcataagttatcaaccaaatgattgttcaaataaca 5028160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 3832589 - 3832645
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| || || | ||||||||||||||||||||||||||    
T  3832589 gtaaattatggttgtcccataagttgtcaatcaaatggttgttcaaataacactcct 3832645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 13143327 - 13143271
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  13143327 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 13143271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 18141246 - 18141190
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  18141246 gtaaattatggttgtcacaaaagttgtcaaccaaatggttgttcaaataacactcct 18141190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 32046825 - 32046877
Alignment:
Q  61 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacact 113  Q
    ||||||||||||||  ||||| || || |||||||||||||||||||||||||    
T  32046825 taaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacact 32046877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 6856102 - 6856057
Alignment:
Q  66 tatggttgtatcataaattatccaccaaatggttgttcaaataaca 111  Q
    |||| |||| ||||||||| || |||||||||||||||||||||||    
T  6856102 tatgtttgtctcataaattgtcaaccaaatggttgttcaaataaca 6856057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 35213506 - 35213450
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||| ||||  || || || || ||||||||||||||||||||||||||||    
T  35213506 gtaaattatgattgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 35213450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 7817762 - 7817818
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| || || ||||||||||||||||||||||||||||    
T  7817762 gtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcct 7817818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 43573487 - 43573432
Alignment:
Q  61 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||| ||| ||||| || |||||||| |||||||||||||||||||    
T  43573487 taaattatggttgtctcaaaaattgtcaaccaaatgattgttcaaataacactcct 43573432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 42555691 - 42555744
Alignment:
Q  61 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 114  Q
    |||||||||||||| ||| || || || ||||||||||||||||||||||||||    
T  42555691 taaattatggttgtctcaaaagttgtcaaccaaatggttgttcaaataacactc 42555744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 11352919 - 11352863
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  11352919 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 11352863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 41894041 - 41894097
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || ||||| || || |||||||||||||||||||||||||    
T  41894041 gtaaattatggttgtcacaaaaattgtcaactaaatggttgttcaaataacactcct 41894097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 10055577 - 10055520
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcctt 117  Q
    ||||||||| |||||  ||||| || || |||||||||||||| ||||||||||||||    
T  10055577 gtaaattatagttgtcccataagttgtcaaccaaatggttgtttaaataacactcctt 10055520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 28036870 - 28036926
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||||||||||||| ||||||||||    
T  28036870 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaattaacactcct 28036926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 47500734 - 47500786
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacac 112  Q
    |||||||||| ||||  ||||| ||||| |||||||||||||| |||||||||    
T  47500734 gtaaattatgattgtcgcataagttatcgaccaaatggttgttgaaataacac 47500786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 34270453 - 34270509
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||||||||| ||| || || || ||||||||||||||||||||||||||||    
T  34270453 gtaaattatggttgtctcaaaatttgtcaaccaaatggttgttcaaataacactcct 34270509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 41175651 - 41175595
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| || || ||||||||||||||||||||||||||||    
T  41175651 gtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcct 41175595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 15952990 - 15952936
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 114  Q
    |||||||||||||||  ||||| || || ||||||||||||||||||||||||||    
T  15952990 gtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactc 15952936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 1839290 - 1839238
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacac 112  Q
    |||||||||||||||  ||||||||||| ||||||||| | ||||||||||||    
T  1839290 gtaaattatggttgtcccataaattatcaaccaaatggcttttcaaataacac 1839238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 8675378 - 8675322
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  8675378 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 8675322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 10649561 - 10649617
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  10649561 gtaaattatggttgtcacaaaagttgtcaaccaaatggttgttcaaataacactcct 10649617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 15478784 - 15478840
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || ||||| || ||||||| ||||||||||||||||||||    
T  15478784 gtaaattatggttgttccaaaaattgtcaaccaaatagttgttcaaataacactcct 15478840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 43441864 - 43441920
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||||||||| | | || || || ||||||||||||||||||||||||||||    
T  43441864 gtaaattatggttgtcttaaaagttgtcaaccaaatggttgttcaaataacactcct 43441920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 19481127 - 19481071
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||| |||||  || || ||||| |||||||| |||||||||||||||||||    
T  19481127 gtaaattatagttgtcccaaaagttatcaaccaaatgattgttcaaataacactcct 19481071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 19839931 - 19839879
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacac 112  Q
    |||||||||||||||  || || ||||| ||||||| ||||||||||||||||    
T  19839931 gtaaattatggttgtcccaaaagttatcaaccaaatagttgttcaaataacac 19839879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 34124747 - 34124803
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||||||||| | | ||||| || |  |||||||||||||||||||||||||    
T  34124747 gtaaattatggttgtcttaaaaattgtcaattaaatggttgttcaaataacactcct 34124803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 39344925 - 39344869
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||| |||| ||| || ||||| ||||||||||||||||||||||||||||    
T  39344925 gtaaattatgattgtctcaaaagttatcaaccaaatggttgttcaaataacactcct 39344869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 47099146 - 47099202
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || ||||| ||||||||||||||||||||||||||||    
T  47099146 gtaaattatggttgtcccaaaagttatcaaccaaatggttgttcaaataacactcct 47099202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 13139293 - 13139330
Alignment:
Q  80 aaattatccaccaaatggttgttcaaataacactcctt 117  Q
    |||||||| |||||||||||||||||||||||||||||    
T  13139293 aaattatcaaccaaatggttgttcaaataacactcctt 13139330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 26718494 - 26718551
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcctt 117  Q
    |||||||||| ||||  || |||||||| ||||||||||| |||||||||||||||||    
T  26718494 gtaaattatgattgtcccaaaaattatcaaccaaatggttattcaaataacactcctt 26718551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 26731122 - 26731179
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcctt 117  Q
    |||||||||| ||||  || |||||||| ||||||||||| |||||||||||||||||    
T  26731122 gtaaattatgattgtcccaaaaattatcaaccaaatggttattcaaataacactcctt 26731179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 12138979 - 12139035
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| ||||| | ||||||||||||||||||||| ||||    
T  12138979 gtaaattatggttgttacataagttatcaatcaaatggttgttcaaataacattcct 12139035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 17683467 - 17683523
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  17683467 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 17683523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 22819775 - 22819831
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  22819775 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 22819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 43769837 - 43769893
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||| ||||| || |||| ||||||||||||||||||||    
T  43769837 gtaaattatggttgtcgcataagttatcaacaaaatagttgttcaaataacactcct 43769893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 32696728 - 32696681
Alignment:
Q  65 ttatggttgtatcataaattatccaccaaatggttgttcaaataacac 112  Q
    |||||||||||  ||||||| || ||||||||||||||||||||||||    
T  32696728 ttatggttgtacaataaattgtcaaccaaatggttgttcaaataacac 32696681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 49896611 - 49896564
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaat 107  Q
    ||||||||||||||| |||| | || ||||||||||||||||||||||    
T  49896611 gtaaattatggttgtctcatgagttgtccaccaaatggttgttcaaat 49896564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 46405919 - 46405865
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 114  Q
    |||||||||||||||   | |||||||| |||||||| |||||||||||||||||    
T  46405919 gtaaattatggttgtccaaaaaattatcaaccaaatgattgttcaaataacactc 46405865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 53654695 - 53654638
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaa-tggttgttcaaataacactcct 116  Q
    |||||||||||||||  ||||||||||| | |||| ||||| ||||||||||||||||    
T  53654695 gtaaattatggttgtcccataaattatcaatcaaattggttattcaaataacactcct 53654638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 1815946 - 1815890
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    ||||||||||| |||  ||||| || || |||| |||||||||||||||||||||||    
T  1815946 gtaaattatggctgtcacataagttgtcaaccagatggttgttcaaataacactcct 1815890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 31657772 - 31657828
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||| ||||||||  || ||||| || |||||||||||||| |||||||||||||    
T  31657772 gtaaatgatggttgtcccaaaaattgtcaaccaaatggttgtttaaataacactcct 31657828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 32696307 - 32696363
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  | ||| || |||||||| ||||||||||||||||| ||||    
T  32696307 gtaaattatggttgtcccttaagttgtccaccaattggttgttcaaataacattcct 32696363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 11090 - 11146
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||| ||||  ||||| || || |||||| |||||||||||||||||||||    
T  11090 gtaaattatgattgtcacataagttgtcaaccaaaaggttgttcaaataacactcct 11146  T

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Target: scaffold0141 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 12058 - 12114
Alignment:
Q  60 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 116  Q
    |||||||||||||||  || || || || ||||||| ||||||||||||||||||||    
T  12058 gtaaattatggttgtcgcaaaagttgtcaaccaaatagttgttcaaataacactcct 12114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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