View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4281_high_2 (Length: 693)
Name: NF4281_high_2
Description: NF4281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4281_high_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 30 - 693
Target Start/End: Original strand, 3743930 - 3744586
Alignment:
| Q |
30 |
cacaattgacgcggactggtcatgcattttttgaaagggcgcaacgattttacacagatattctctgtataatgtaattttgagaatccccatatcaatt |
129 |
Q |
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| T |
3743930 |
cacaattgacccggactgttcatgcattttttgaaagggcgcaacgattttacacatttattctctgtataatgtaattttgagaagccccatatcaatt |
3744029 |
T |
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| Q |
130 |
taaacttttctagtattgccaaagtaaataataaaacttgcaacagagaagatttttggagtatggaacagagaagctttgcacaagagaaagcatatgg |
229 |
Q |
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| T |
3744030 |
taaacttttctagtattgtcaaagtaaataataaaaattacaacagagaagatttttggaatatggaacagagaagctttgcacaagagaaagcatatgg |
3744129 |
T |
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| Q |
230 |
catagatagaaacagtgacacatcattcgggataaaacgctatgtttagcattattgaaacatagcaaaaacgttttatcccgtagcatcccaaatgatg |
329 |
Q |
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| T |
3744130 |
catagattgaaacagtgacacatcattcgggataaaacgctatgtttagcattattgaaacatagcaaaaacgttttatcccgtagcatcccaaatgatg |
3744229 |
T |
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| Q |
330 |
tatcactgtccctatatctatgtcatgtgctttctcttgtgcaaagcttagtcttcaaactcagtaaaattttgaaatatatataattttataaatttat |
429 |
Q |
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| T |
3744230 |
tatcactgttcctatatctatgccatgtgctttctcttgtgtaaagcttagtcttcaaactcagtaaaattttgaaatatctataatttcataaatttat |
3744329 |
T |
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| Q |
430 |
ttgatagtcctgagatggttgaacaatgaattatcaatcatcaattatgctagcccaaagctcgttccgtagaaggatttatcgcgtcaaaagtagcaag |
529 |
Q |
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| T |
3744330 |
ttgatagtcctgagatggttgaacaatgaattatcaatcatcaattatgctagctcaaagctcgttccgtagaaggatttatcgcgtcataagtagcaag |
3744429 |
T |
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| Q |
530 |
acatagtgaatacaatatccaacttaaaacaagaaaacatatgctaaatttaatcaaatacatcatatttccctctcttaatccacaattactaattcaa |
629 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3744430 |
acatagcgaataaaatatccaacttaaaacaagaaaacatatgctaaatttaatcaaatacatcatatttctctctcttaatccacaattactaattcaa |
3744529 |
T |
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| Q |
630 |
aatcaagaacaaagaacaagaacaatcacaatcacagaaacagaataactgcattgcaaatcaa |
693 |
Q |
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| T |
3744530 |
aatc-------aagaacaagaacaatcaaaatcacagaaacagaataactgcattgcaaatcaa |
3744586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 3744278 - 3744217
Alignment:
| Q |
203 |
aagctttgcacaagagaaagcatatggcatag--atagaaacagtgacacatcattcgggat |
262 |
Q |
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| T |
3744278 |
aagctttacacaagagaaagcacatggcatagatataggaacagtgatacatcatttgggat |
3744217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 39205245 - 39205178
Alignment:
| Q |
102 |
tgtaattttgagaatccccatatcaatttaaacttttctagtattgccaaagtaaataataaaacttgcaaca |
174 |
Q |
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| T |
39205245 |
tgtatttttgagaagccccatatcaatttaaacttttc-----ttgccaaagtaaataataaaaattgcaaca |
39205178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 20196243 - 20196286
Alignment:
| Q |
195 |
gaacagagaagctttgcacaagagaaagcatatggcatagatag |
238 |
Q |
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| T |
20196243 |
gaacaaagaagttttgcacaagagaaagcatgtggcatagatag |
20196286 |
T |
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