View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4281_high_5 (Length: 338)
Name: NF4281_high_5
Description: NF4281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4281_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 34760140 - 34759825
Alignment:
| Q |
18 |
tttgttcagaaaagtaatatcaaaatcctgtattacacgagaaggatcttcttgtacctacattggttattggatgccaaacatg----acttttctagc |
113 |
Q |
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| T |
34760140 |
tttgttcagaaaagtaatatcaaaatcctgaattacacgagaaggatcttcttgtacctacattggttattggatgccaaacatgtataacttttctagc |
34760041 |
T |
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| Q |
114 |
aaaaactnnnnnnnnng-gggctatgtttattgccgcatatctgtctattaacaaccttaaatgcatcttattaatcttattacagcatgcaattctttt |
212 |
Q |
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| T |
34760040 |
aaaaactaaaaagaaaaagggctatgtttattgctgcatatctgtctattaacaaccttaaatgcatcttattaatcttattacagcatgcaattctttt |
34759941 |
T |
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| Q |
213 |
tgtaaatggaaatcaatactttggagcaaaggcaaatataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34759940 |
tgtaaatggaaatcaatactttggagcaaaggcaaacataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggtt |
34759841 |
T |
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| Q |
313 |
attgctggctcctttg |
328 |
Q |
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| T |
34759840 |
attgctggctcctttg |
34759825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 43729184 - 43729054
Alignment:
| Q |
190 |
ttattacagcatgcaattctttttgtaaatggaaatcaatactttggagcaaaggcaaatataaatgtgtgggcacctcatgtaacagatggatatgaat |
289 |
Q |
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| T |
43729184 |
ttattgcagcatgcagttgtttttgtaaatggagaacaatactatggagcaaaagcaagcataaatgtgtggacaccaagggtaactgatcaatatgaat |
43729085 |
T |
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| Q |
290 |
ttagcttgtcacagatatgggttattgctgg |
320 |
Q |
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| T |
43729084 |
tcagcttatcacaaatatgggttattgctgg |
43729054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 30928769 - 30928677
Alignment:
| Q |
219 |
tggaaatcaatactttggagcaaaggcaaatataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggt |
311 |
Q |
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| T |
30928769 |
tggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggt |
30928677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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