View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4281_low_10 (Length: 323)

Name: NF4281_low_10
Description: NF4281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4281_low_10
NF4281_low_10
[»] chr4 (1 HSPs)
chr4 (19-313)||(35556858-35557152)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 35557152 - 35556858
Alignment:
Q  19 gaatccaccacatttcgcatttgaatttgaatattgaagaagatgagtcaaggaagtggaggaggaggatcttcatcttctcactcagtagcctttcgtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35557152 gaatccaccacatttcgcatttgaatttgaatattgaagaagatgagtcaaggaagtggaggaggaggatcttcatcttctcactcagtagcctttcgtg 35557053  T
Q  119 tcatgcgactctgtcgtccatccttcaacgtcgaccctcctcttcgtatcgatcccgacgacctcttcgtcggtgaagatcacttcgatgatccctccgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35557052 tcatgcgactctgtcgtccatccttcaacgtcgaccctcctcttcgtatcgatcccgacgacctcttcgtcggtgaagaccacttcgatgatccctccgc 35556953  T
Q  219 cccttcctcctccgacctcattgctcccgattccgatcccaattatcgcaatagattcctccttcaacacttctcagattccatgggtctctctg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35556952 cccttcctcctccgacctcattgctcccgattccgatcccaattatcgcaatagattcctccttcaacacttctcagattctatgggtctctctg 35556858  T

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