View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4281_low_11 (Length: 315)
Name: NF4281_low_11
Description: NF4281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4281_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 40001035 - 40001339
Alignment:
| Q |
1 |
aatcaacatattctcttgtaatatctgagttaaaagagaaaatggaaaattatggccaatttagtttgcacacagtacggtctattccatcattcatcaa |
100 |
Q |
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| T |
40001035 |
aatcaacatattcttttgtaatatatgagttaaaagagaaaatggaaaattatggctaatttagtttgcacacaatacggtctattccatcattcatcaa |
40001134 |
T |
|
| Q |
101 |
aaaatcactaatgatacaaagctatatagacttagaaacaacgtcaaaaacccatgatcaaatcattattcaaatgagtttttattgaaaatccatctaa |
200 |
Q |
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| T |
40001135 |
aaaatcactaatgatacgaagc--tatagatttagaaacaacgtcaaaaacccatggtcaaatcattattcaaatgagtttttattgaaaatccatctaa |
40001232 |
T |
|
| Q |
201 |
taaacacat-gagtataattgaacctaattttgacaacatcatttagattaaggccac----atgtataaattgtgtttacaattatacaattgcacatg |
295 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
40001233 |
taaacacatggagtataattgaacctaattttgacaacatcatttagattaaggccacgtgtatatataaattgtgtttacaattatacaattggacatg |
40001332 |
T |
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| Q |
296 |
atcaata |
302 |
Q |
| |
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||||||| |
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| T |
40001333 |
atcaata |
40001339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 43103127 - 43103190
Alignment:
| Q |
196 |
tctaataaacacatg-agtataattgaacctaattttgacaacatcatttagattaaggccaca |
258 |
Q |
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| T |
43103127 |
tctaataaacacatggagtataattgaacctaatttatgcaacatcatttagatgaagtccaca |
43103190 |
T |
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