View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4281_low_12 (Length: 274)
Name: NF4281_low_12
Description: NF4281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4281_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 21460386 - 21460128
Alignment:
| Q |
1 |
ggaagctaagtaattataactaagttatgatcctagcatctggttatacattagattttattataatttgcaactgatactcatgcaaattttcttatat |
100 |
Q |
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| T |
21460386 |
ggaagctaagtaattataactaagttatgatcctagcatctgattatacattagattttattataatttgtaactgatactcatgcaaattttcttatat |
21460287 |
T |
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| Q |
101 |
atataatcaaatctaagtnnnnnnn---gaaacaatactaatgcataagcataaattacttctgagtctaatttttgcaacattgaattctaaaccagta |
197 |
Q |
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| T |
21460286 |
atataatcaaatctaagtaaaaaaaaaagaaacaatactaatgcataagcataaattacttctgagtctaatttttgcaacattgaattctaaaccagta |
21460187 |
T |
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| Q |
198 |
ggcggaagcaaatgatattttagaaggaggattttaccatctcaaacctgccattgagt |
256 |
Q |
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| T |
21460186 |
ggcggaagcaaatgatattttggaaggaggattttaccatcccaaacctgccattgagt |
21460128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 42949950 - 42949865
Alignment:
| Q |
72 |
aactgatactcatgcaaattttcttatatatataatcaaatctaagtnnnnnnngaaacaatactaatgcataagcataaattacttc |
159 |
Q |
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| T |
42949950 |
aactgatactcatgcaaattttat--tatatataatcaaatctcagtaataaaggaaacaacactaatgcataagcatacatttcttc |
42949865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 2851563 - 2851485
Alignment:
| Q |
160 |
tgagtctaatttttgcaacattgaattctaaaccagtaggcggaagcaaatgatattttagaaggaggattttaccatc |
238 |
Q |
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| T |
2851563 |
tgagtctaacttttgcaacattgggttctaaaccaatgggcagaagcaactgataatttgggaggacgattttatcatc |
2851485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 2903595 - 2903517
Alignment:
| Q |
160 |
tgagtctaatttttgcaacattgaattctaaaccagtaggcggaagcaaatgatattttagaaggaggattttaccatc |
238 |
Q |
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| T |
2903595 |
tgagtctaacttttgcaacattgggttctaaaccaatgggcagaagcaactgataatttgggaggacgattttatcatc |
2903517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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