View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4281_low_17 (Length: 246)
Name: NF4281_low_17
Description: NF4281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4281_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 31267788 - 31267561
Alignment:
| Q |
6 |
gtccaagaatattccattcctcatttttaaacccacttttctacacccatcaattttttcacaattcttttcttcatgtactttgtctcttgcatctgta |
105 |
Q |
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| T |
31267788 |
gtccaagaaaattccattcctcatttttaaacccacttttctacacccatcaattttttcacaattcttttcttcatgtactttgtctcttgcatctgta |
31267689 |
T |
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| Q |
106 |
aaaaagattccaaagacaaaataaaatgtatctttttgataaatcatttacttttagatagcaacgtatgtattaactag-nnnnnnnngtgcatgcatc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31267688 |
aaaaagattccaaagacaaaataaaatgtatctttttgataaatcatttacttttagatagcaacgtatgtattaactagaaaaaaaaagtgcatgcatc |
31267589 |
T |
|
| Q |
205 |
atacacattatttaatttatgcactata |
232 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
31267588 |
atacacattatttaatttatgcactata |
31267561 |
T |
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