View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4281_low_7 (Length: 336)
Name: NF4281_low_7
Description: NF4281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4281_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 37408707 - 37409012
Alignment:
| Q |
18 |
agttcggacattacgaagttgaccaagccctgccggaatctcaccggagatgaaattccgactaataccgagaaacctgagattcttcaactgtgaaatg |
117 |
Q |
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| T |
37408707 |
agttcggacattacgaagttgaccaagccctgccggaatctcaccggagatgaaattccgactaataccgagaaacctgagattcttcaactgtgaaatg |
37408806 |
T |
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| Q |
118 |
gactgagggagatgaccgtaaattctccccggagaaacggttaaatctacgagagacgagagttttccgatggcgatgtcgatttttcctgtgaggccag |
217 |
Q |
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| T |
37408807 |
gactgagggagatgaccgtaaattctccccggagaaacggttaaatctacgagagacgagagttttccgatggcggtgtcgatttttcctgtgaggccag |
37408906 |
T |
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| Q |
218 |
gtgaaccggctctagattctcctagactgagtgcaatgactttatcggtggcgcagtaaacgccggcgaagttgcagggatcatcggtgaagtcccatga |
317 |
Q |
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| T |
37408907 |
gtgaaccggctctagattctcctagactgagtgcaatgactttatcggtggcgcagtaaacgccggcgaagttgcagggatcatcggtgaagtcccatga |
37409006 |
T |
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| Q |
318 |
tgagaa |
323 |
Q |
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|||||| |
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| T |
37409007 |
tgagaa |
37409012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 40085194 - 40085295
Alignment:
| Q |
49 |
gccggaatctcaccggagatgaaattccgactaataccgagaaacctgagattcttcaactgtgaaatggactgagggagatgaccgtaaattctccccg |
148 |
Q |
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||||||||||||||||||||||| || | ||| ||| |||||||||||||||||||| |||||||| ||||| ||| |||| || ||||| |||| |
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| T |
40085194 |
gccggaatctcaccggagatgaagtttctgttaacaccaagaaacctgagattcttcaagcttgaaatggtttgaggaagaggaccatatattcttcccg |
40085293 |
T |
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| Q |
149 |
ga |
150 |
Q |
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|| |
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| T |
40085294 |
ga |
40085295 |
T |
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