View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4281_low_8 (Length: 335)
Name: NF4281_low_8
Description: NF4281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4281_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 20488398 - 20488718
Alignment:
| Q |
1 |
gtatccattcctttcttctctcataatcttttgtgtgaaagttgagctattattgtatccaattacttcattgtatcctgagaagtatcttgatgcttca |
100 |
Q |
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| T |
20488398 |
gtatccattcctttcttctctcataatcttttgtgtgaaagttgagctattattgtatccaataacttcattgtatcctgagaagtatcttgatgcttcg |
20488497 |
T |
|
| Q |
101 |
aacacatcaagctcaccagaatcatttcttctgtggaaggatttcttattgtggttcatttcttggtctataataagtcctgctagggacatggtgtaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20488498 |
aacacatcaagctcaccagaatcatttcttctgtggaaggatttcttattgtggttcatttcttggtctataataagtcctgctagggacatggtgtaat |
20488597 |
T |
|
| Q |
201 |
aatctctgatgtttttgcaaatttagaatgtttgaaaagtatggttaggaatatgtaacaagaggatgaggctatatcaaggatggtaagatgatatcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20488598 |
aatctctgatgtttttgcaaatttagaatgtttgaaaagtatggttaggaatatgtaacaagaggatgaggctatatcaaggatggtaagatgatatcaa |
20488697 |
T |
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| Q |
301 |
aggggtttgaaatgattgaga |
321 |
Q |
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|||| |||||||||||||||| |
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| T |
20488698 |
agggttttgaaatgattgaga |
20488718 |
T |
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