View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282-Insertion-14 (Length: 225)
Name: NF4282-Insertion-14
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282-Insertion-14 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 34720644 - 34720863
Alignment:
| Q |
6 |
acattaacgataaatcaagtagagtctcaagaaaccatatcttacctcaggcatacccgttgaattttcccttataatttctcttccgcaatcttgtact |
105 |
Q |
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| T |
34720644 |
acattaacgataaatcaagtagagtctcaagaaaccatatcttacctcaggcatacccgttgaattttcccttataatttctcttccgcaatcttgtact |
34720743 |
T |
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| Q |
106 |
aaaccatgcattctaatcctgttcttgctatctacggttacaagtcttcgtcgtacaaggacatctattccattttctgaagaatgtccacggtctttta |
205 |
Q |
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| T |
34720744 |
aaaccatgcattctaatcctgttcttgctatctacggttacaagtcttcgttgtacaaggacatctattccattttctgaagaatgtccacggtctttta |
34720843 |
T |
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| Q |
206 |
atttctgaattacttcatcc |
225 |
Q |
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| T |
34720844 |
atttctgaattacttcatcc |
34720863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 34720243 - 34720391
Alignment:
| Q |
31 |
ctcaagaaaccatatcttacctcaggcatacccgttgaattttcccttataatttctcttccgcaatcttgtactaaaccatgcattctaatcctgttct |
130 |
Q |
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| T |
34720243 |
ctcaaaaaatcatatcttacctcagaaataccccttaaattttcccttataatttctcttctgcgatcttgtactaaaccacgcaatccaatcc---cat |
34720339 |
T |
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| Q |
131 |
tgctatctacggttacaagtcttcgtcgtacaaggacatctattccattttc |
182 |
Q |
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| T |
34720340 |
tgctatctatagttgcaaatcttggttgtacaaggacatgcattccattttc |
34720391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 18924806 - 18924719
Alignment:
| Q |
80 |
taatttctcttccgcaatcttgtactaaaccatgcattctaatcctgttcttgctatctacggttacaagtcttcgtcgtacaaggac |
167 |
Q |
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| T |
18924806 |
taatatctcttccaaaatgttgtactggaccatacatacaaatcctgttcttgctatccacagttacaagtcttcgttgtagaaggac |
18924719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 21226750 - 21226712
Alignment:
| Q |
111 |
atgcattctaatcctgttcttgctatctacggttacaag |
149 |
Q |
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| T |
21226750 |
atgcattccaatcttgttcttgctatctacggttacaag |
21226712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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