View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4282-Insertion-15 (Length: 105)

Name: NF4282-Insertion-15
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4282-Insertion-15
NF4282-Insertion-15
[»] chr8 (4 HSPs)
chr8 (4-104)||(36202782-36202882)
chr8 (14-80)||(36197247-36197313)
chr8 (14-65)||(36210380-36210431)
chr8 (4-75)||(36213718-36213789)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 2e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 36202882 - 36202782
Alignment:
Q  4 agattatggatgcactaagagtgagagaccaagaagaaaccataattggattatgcgggccagatgaaagaggcaaggcttctgtcacaaccgttatgag 103  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36202882 agattatggatgcactaagagtgagagaccaaggagaaaacataattggattatgcgggccagatgaaagagtcaaggcttctgtcacaaccgttatgag 36202783  T
Q  104 a 104  Q
    |    
T  36202782 a 36202782  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 36197313 - 36197247
Alignment:
Q  14 tgcactaagagtgagagaccaagaagaaaccataattggattatgcgggccagatgaaagaggcaag 80  Q
    ||||||||||||||||||||||| |||||  || ||||||||||| ||||||||  |||||| ||||    
T  36197313 tgcactaagagtgagagaccaaggagaaaatatcattggattatgtgggccagaaaaaagagtcaag 36197247  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 36210431 - 36210380
Alignment:
Q  14 tgcactaagagtgagagaccaagaagaaaccataattggattatgcgggcca 65  Q
    ||||||||| ||||||||||||| |||||  ||||| |||||||||||||||    
T  36210431 tgcactaagtgtgagagaccaaggagaaaatataatcggattatgcgggcca 36210380  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 36213789 - 36213718
Alignment:
Q  4 agattatggatgcactaagagtgagagaccaagaagaaaccataattggattatgcgggccagatgaaagag 75  Q
    |||||| | ||||| ||| |||||||||||||| |||||  ||||| ||||||||||| || ||||||||||    
T  36213789 agattacgaatgcattaaaagtgagagaccaaggagaaaatataatcggattatgcggcccggatgaaagag 36213718  T

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