View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282-Insertion-25 (Length: 150)
Name: NF4282-Insertion-25
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282-Insertion-25 |
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| [»] scaffold0635 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 65; Significance: 6e-29; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 763 - 648
Alignment:
| Q |
35 |
ttgtttatttctgtgcctttttaaattctaatgatgccaagaagataagcttaccataagtaatttcccaatttgatacaattcgttaatgagctacaat |
134 |
Q |
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| T |
763 |
ttgtttatttctatgactttt-aaattctaatgatgccaagaagataagcttgccacaagtaattaccagatttgatacaattcattaatgaactacaat |
665 |
T |
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| Q |
135 |
a-aaaataaattgtttg |
150 |
Q |
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| T |
664 |
aaaaaataaattgtttg |
648 |
T |
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Target: chr2 (Bit Score: 65; Significance: 6e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 10108021 - 10108136
Alignment:
| Q |
35 |
ttgtttatttctgtgcctttttaaattctaatgatgccaagaagataagcttaccataagtaatttcccaatttgatacaattcgttaatgagctacaat |
134 |
Q |
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|||||||||||| || ||||| |||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||| ||||||| ||||||| |
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| T |
10108021 |
ttgtttatttctatgactttt-aaattctaatgatgccaagaagataagcttgccacaagtaattaccagatttgatacaattcattaatgaactacaat |
10108119 |
T |
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| Q |
135 |
-aaaaataaattgtttg |
150 |
Q |
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| T |
10108120 |
aaaaaataaattgtttg |
10108136 |
T |
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