View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282-Insertion-29 (Length: 144)
Name: NF4282-Insertion-29
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282-Insertion-29 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 4e-67; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 21433829 - 21433697
Alignment:
| Q |
12 |
agattaactatcactacactaaccattccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacctttttattatcatcaagaatta |
111 |
Q |
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| T |
21433829 |
agattaactaccactacactaaccattccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacctttttattatcatcaagaatta |
21433730 |
T |
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| Q |
112 |
ggatagaactttctgtccccaacacaagattca |
144 |
Q |
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| T |
21433729 |
ggatagaactttctgtccccaacacaagattca |
21433697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 27075494 - 27075599
Alignment:
| Q |
36 |
attccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacctttttattatcatcaagaattaggatagaactttctgtccccaaca |
135 |
Q |
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| T |
27075494 |
attctaattaaacaattccgcaaaaacaagtcagaaactagcagtgcactcacctcttctttatcatcaagaattaagatagaattttctgtccccaaca |
27075593 |
T |
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| Q |
136 |
caagat |
141 |
Q |
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| T |
27075594 |
caagat |
27075599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 27152780 - 27152667
Alignment:
| Q |
32 |
aaccattccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacct-ttttattatcatcaagaattaggatagaactttctgtccc |
130 |
Q |
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| T |
27152780 |
aaccattccaattagataattcagaaaaaaccaatcagaaactagcagtgcactcacctttttttttatcatcaagaattattattacactttttgtccc |
27152681 |
T |
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| Q |
131 |
caacacaagattca |
144 |
Q |
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| T |
27152680 |
caacacaacattca |
27152667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 27028592 - 27028520
Alignment:
| Q |
69 |
gaaactagcagcgcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagat |
141 |
Q |
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| T |
27028592 |
gaaactagcagtgcactcacctcttctttatcatcaagaattaagatagaattttctgtccccaacacaagat |
27028520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 26989761 - 26989701
Alignment:
| Q |
81 |
gcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagat |
141 |
Q |
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| T |
26989761 |
gcactcacctcttctttgtcatcaagaattatgatagaattttctgtccccaacacaagat |
26989701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 34691836 - 34691776
Alignment:
| Q |
81 |
gcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagat |
141 |
Q |
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| T |
34691836 |
gcactcacctcttctttgtcatcaagaattacgatagaattttctgtccccaacacaagat |
34691776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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