View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282-Insertion-35 (Length: 123)
Name: NF4282-Insertion-35
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282-Insertion-35 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 34593227 - 34593349
Alignment:
| Q |
1 |
ataggacagacatcaagaggaatcaccgacatctcaactggttgctggcacctcggagaacttccatcctctaacgcctacctcaaaaattttatt--aa |
98 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
34593227 |
ataggacagatatcaagaggaaacaccgacatctcaactggttgctggcacctcggagaacttccatcctctaccgcctacctcaaaaattttattaaaa |
34593326 |
T |
|
| Q |
99 |
aaaaggaatagtgtatgaaatca |
121 |
Q |
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|||| | |||||||||||||||| |
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| T |
34593327 |
aaaaaggatagtgtatgaaatca |
34593349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 25538882 - 25538786
Alignment:
| Q |
1 |
ataggacagacatcaagaggaatcaccgacatctcaactggttgctggcacctcggagaacttccatcctctaacgcctacctcaaaaattttattaaaa |
100 |
Q |
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| T |
25538882 |
ataggacatgcatcaagaggaaacaccgacattccaactggatc---gcatctcggagaatctctatcctctaccgcctaactcaaaaattttattaaaa |
25538786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 24123016 - 24122981
Alignment:
| Q |
4 |
ggacagacatcaagaggaatcaccgacatctcaact |
39 |
Q |
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| T |
24123016 |
ggacagacatcaagaggaaacaccgacatctcaact |
24122981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 1537958 - 1537993
Alignment:
| Q |
4 |
ggacagacatcaagaggaatcaccgacatctcaact |
39 |
Q |
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||||||||||||||||||| |||||||||| ||||| |
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| T |
1537958 |
ggacagacatcaagaggaaacaccgacatcccaact |
1537993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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