View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282-Insertion-39 (Length: 212)
Name: NF4282-Insertion-39
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282-Insertion-39 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 2796033 - 2796235
Alignment:
| Q |
10 |
acaaagatttataatcctgaaaagggagcatggactgaattgagtcctcttgatgtgatgcagatgttgggtcgtgccggaaggccacagtatgactcat |
109 |
Q |
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| T |
2796033 |
acaaagatttataatcctgaaagaggagcatggactgaattgagtcctcttgatgtgatgcagatgttgggtcgtgccggaaggccacagtatgactcat |
2796132 |
T |
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| Q |
110 |
gtggtgagggaattgttgttactggccatagtgagttgcagtattatctctctcttatgaatcaacaacttcctattgagagccagtttatttccaagct |
209 |
Q |
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| T |
2796133 |
gtggtatgggaattgttgttactggccatagtgagttgcagtattatctctctcttatgaatcaacaacttcctattgagagccagtttatttccaagct |
2796232 |
T |
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| Q |
210 |
ggc |
212 |
Q |
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| T |
2796233 |
ggc |
2796235 |
T |
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Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 29263550 - 29263748
Alignment:
| Q |
14 |
agatttataatcctgaaaagggagcatggactgaattgagtcctcttgatgtgatgcagatgttgggtcgtgccggaaggccacagtatgactcatgtgg |
113 |
Q |
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||||||||||||| |||||||| || ||||||||| ||||||| ||||| || ||||||||||||||||||||||||||||| || |||||||| | ||| |
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| T |
29263550 |
agatttataatcccgaaaagggggcctggactgaactgagtccacttgacgttatgcagatgttgggtcgtgccggaaggcctcaatatgactcttatgg |
29263649 |
T |
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| Q |
114 |
tgagggaattgttgttactggccatagtgagttgcagtattatctctctcttatgaatcaacaacttcctattgagagccagtttatttccaagctggc |
212 |
Q |
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| T |
29263650 |
tgagggaattattcttacgggccacagtgagttgcaatattacctctctctaatgaaccaacaacttcccatcgagagccagtttatttccaagctggc |
29263748 |
T |
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