View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4282-Insertion-40 (Length: 49)

Name: NF4282-Insertion-40
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4282-Insertion-40
NF4282-Insertion-40
[»] chr3 (3 HSPs)
chr3 (1-49)||(47278059-47278107)
chr3 (1-49)||(8541378-8541426)
chr3 (5-40)||(50769972-50770007)
[»] chr4 (7 HSPs)
chr4 (1-49)||(35187343-35187391)
chr4 (1-49)||(31835476-31835524)
chr4 (1-49)||(27993634-27993682)
chr4 (1-49)||(16207292-16207340)
chr4 (5-40)||(22910797-22910832)
chr4 (5-40)||(22967690-22967725)
chr4 (1-31)||(5232311-5232341)
[»] scaffold0648 (1 HSPs)
scaffold0648 (1-49)||(4384-4432)
[»] scaffold0274 (1 HSPs)
scaffold0274 (1-49)||(3854-3902)
[»] chr1 (3 HSPs)
chr1 (1-49)||(25160466-25160514)
chr1 (5-40)||(39864729-39864764)
chr1 (3-33)||(25244867-25244897)
[»] chr6 (3 HSPs)
chr6 (1-49)||(29968426-29968474)
chr6 (1-35)||(32218115-32218149)
chr6 (1-35)||(34884327-34884361)
[»] scaffold0542 (1 HSPs)
scaffold0542 (1-33)||(9706-9738)
[»] chr2 (3 HSPs)
chr2 (1-49)||(7497323-7497369)
chr2 (5-40)||(26823150-26823185)
chr2 (1-40)||(43822619-43822658)
[»] chr8 (1 HSPs)
chr8 (1-49)||(8643265-8643313)
[»] chr7 (3 HSPs)
chr7 (5-40)||(23328956-23328991)
chr7 (2-40)||(4038565-4038603)
chr7 (1-35)||(14784654-14784688)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-35)||(47254-47288)
[»] chr5 (2 HSPs)
chr5 (1-35)||(4428699-4428733)
chr5 (1-35)||(16967121-16967155)


Alignment Details
Target: chr3 (Bit Score: 49; Significance: 5e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-20
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47278107 - 47278059
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47278107 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 47278059  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8541378 - 8541426
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 49  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  8541378 ttaatatatattccacaaatatttggtaccccctagaaatgatatcaag 8541426  T

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Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 50770007 - 50769972
Alignment:
Q  5 tatatattccacaaatatttggcacccccgagaaat 40  Q
    ||||||||| ||||||||||||||||||||| ||||    
T  50770007 tatatattctacaaatatttggcacccccgataaat 50769972  T

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Target: chr4 (Bit Score: 45; Significance: 1e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35187391 - 35187343
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 49  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35187391 ttaatatatattccataaatatttggcacccccgagaaatggtatcaag 35187343  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31835524 - 31835476
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 49  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  31835524 ttaatatatattccacaattatttggcacccccgagaaatgatatcaag 31835476  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27993682 - 27993634
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 49  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  27993682 ttaatatatattccacaaatatttggcacccccaaaaaatgatatcaag 27993634  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16207292 - 16207340
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 49  Q
    ||||||||||||||||||||||||| |||| |||| ||||| |||||||    
T  16207292 ttaatatatattccacaaatatttgacacctccgaaaaatgatatcaag 16207340  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 22910832 - 22910797
Alignment:
Q  5 tatatattccacaaatatttggcacccccgagaaat 40  Q
    ||||||||| ||||||||||||||||||||||||||    
T  22910832 tatatattctacaaatatttggcacccccgagaaat 22910797  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 22967690 - 22967725
Alignment:
Q  5 tatatattccacaaatatttggcacccccgagaaat 40  Q
    ||||||||| ||||||||||||||||||||||||||    
T  22967690 tatatattctacaaatatttggcacccccgagaaat 22967725  T

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Target: chr4; HSP #7
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 5232341 - 5232311
Alignment:
Q  1 ttaatatatattccacaaatatttggcaccc 31  Q
    ||||||||||||||| |||||||||||||||    
T  5232341 ttaatatatattccataaatatttggcaccc 5232311  T

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Target: scaffold0648 (Bit Score: 41; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4432 - 4384
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 49  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  4432 ttaatatatattccacaattatttggcacccccgagaaatgatatcaag 4384  T

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Target: scaffold0274 (Bit Score: 41; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3902 - 3854
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 49  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  3902 ttaatatatattccacaattatttggcacccccgagaaatgatatcaag 3854  T

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Target: chr1 (Bit Score: 41; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25160514 - 25160466
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 49  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||    
T  25160514 ttaatatatattccacaaatatttggcacccccgtgaaatgatatcaag 25160466  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 39864729 - 39864764
Alignment:
Q  5 tatatattccacaaatatttggcacccccgagaaat 40  Q
    ||||||||| ||||||||||||||||||||||||||    
T  39864729 tatatattctacaaatatttggcacccccgagaaat 39864764  T

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Target: chr1; HSP #3
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 25244867 - 25244897
Alignment:
Q  3 aatatatattccacaaatatttggcaccccc 33  Q
    ||||||||||| |||||||||||||||||||    
T  25244867 aatatatattctacaaatatttggcaccccc 25244897  T

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Target: chr6 (Bit Score: 37; Significance: 0.0000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29968474 - 29968426
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 49  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  29968474 ttaatatatattccacaaatatttgacacccccgaaaaatgatatcaag 29968426  T

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Target: chr6; HSP #2
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 32218149 - 32218115
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccga 35  Q
    ||||||||||||||||||||||||  |||||||||    
T  32218149 ttaatatatattccacaaatatttatcacccccga 32218115  T

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Target: chr6; HSP #3
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34884361 - 34884327
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccga 35  Q
    |||||||||||||  ||||||||||||||||||||    
T  34884361 ttaatatatattcttcaaatatttggcacccccga 34884327  T

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Target: scaffold0542 (Bit Score: 33; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9738 - 9706
Alignment:
Q  1 ttaatatatattccacaaatatttggcaccccc 33  Q
    |||||||||||||||||||||||||||||||||    
T  9738 ttaatatatattccacaaatatttggcaccccc 9706  T

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Target: chr2 (Bit Score: 33; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7497323 - 7497369
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 49  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  7497323 ttaatatatattccacaaatatttggca-ccccgag-aatggtatcaag 7497369  T

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Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 26823150 - 26823185
Alignment:
Q  5 tatatattccacaaatatttggcacccccgagaaat 40  Q
    ||||||||| ||||||||||||||||||||| ||||    
T  26823150 tatatattctacaaatatttggcacccccgataaat 26823185  T

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Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43822658 - 43822619
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaat 40  Q
    ||||||||||||| |||||||||||  |||||||||||||    
T  43822658 ttaatatatattctacaaatatttgcaacccccgagaaat 43822619  T

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Target: chr8 (Bit Score: 29; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8643313 - 8643265
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccgagaaatggtatcaag 49  Q
    ||||||||||||| |||||||||||||||| || | ||||| |||||||    
T  8643313 ttaatatatattcgacaaatatttggcacctccaaaaaatgatatcaag 8643265  T

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Target: chr7 (Bit Score: 28; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 23328956 - 23328991
Alignment:
Q  5 tatatattccacaaatatttggcacccccgagaaat 40  Q
    ||||||||| ||||||||||||||||| ||||||||    
T  23328956 tatatattctacaaatatttggcaccctcgagaaat 23328991  T

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Target: chr7; HSP #2
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 4038565 - 4038603
Alignment:
Q  2 taatatatattccacaaatatttggcacccccgagaaat 40  Q
    |||||||||||||| |||||| |||| ||||||||||||    
T  4038565 taatatatattccagaaatatctggcgcccccgagaaat 4038603  T

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Target: chr7; HSP #3
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14784688 - 14784654
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccga 35  Q
    |||||||||||||  ||||||||||||||||||||    
T  14784688 ttaatatatattcttcaaatatttggcacccccga 14784654  T

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Target: scaffold0097 (Bit Score: 27; Significance: 0.0000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 47288 - 47254
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccga 35  Q
    |||||||||||| || |||||||||||||||||||    
T  47288 ttaatatatatttcataaatatttggcacccccga 47254  T

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Target: chr5 (Bit Score: 27; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4428733 - 4428699
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccga 35  Q
    |||||||||||||  ||||||||||||||||||||    
T  4428733 ttaatatatattcttcaaatatttggcacccccga 4428699  T

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Target: chr5; HSP #2
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 16967155 - 16967121
Alignment:
Q  1 ttaatatatattccacaaatatttggcacccccga 35  Q
    ||||||||||||| |||||||||||||||| ||||    
T  16967155 ttaatatatattcaacaaatatttggcacctccga 16967121  T

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