View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282-Insertion-42 (Length: 177)
Name: NF4282-Insertion-42
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282-Insertion-42 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 44103226 - 44103404
Alignment:
| Q |
1 |
gtaatctgctgccatttcacagaaatgattagccaggtcatacgcgataggattgtaacttgcgtattcgtagtcctatatcaaaataaaataaaattag |
100 |
Q |
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| T |
44103226 |
gtaatctgctgccatttcacagaaatgattagccaggtcatacgcgataggattgtaactcgcgtattcgtagtcctatatcaaaataaaataaaattag |
44103325 |
T |
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| Q |
101 |
agaactgcaatataagtaactaccatgttttggaaaggcaaag--aaatatataaccattagcttacaattagtgtgat |
177 |
Q |
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| T |
44103326 |
agaactgcaatataagtaactaccatgttttggaaaggcaaagaaaaatatataaccattagcttacaattagggtgat |
44103404 |
T |
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Target: chr6 (Bit Score: 47; Significance: 4e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 14332205 - 14332287
Alignment:
| Q |
1 |
gtaatctgctgccatttcacagaaatgattagccaggtcatacgcgataggattgtaacttgcgtattcgtagtcctatatca |
83 |
Q |
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| T |
14332205 |
gtaatttgcggccatttcacagaaatgatttgcaaggtcatacgcaacaggattgtaactcgagtactcgtagtcctatatca |
14332287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 14425215 - 14425297
Alignment:
| Q |
1 |
gtaatctgctgccatttcacagaaatgattagccaggtcatacgcgataggattgtaacttgcgtattcgtagtcctatatca |
83 |
Q |
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| T |
14425215 |
gtaatttgcggccatttcacagaaatgatttgcaaggtcatacgcaacaggattgtaactcgagtactcgtagtcctatatca |
14425297 |
T |
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