View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282-Insertion-43 (Length: 163)
Name: NF4282-Insertion-43
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282-Insertion-43 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 8e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 8e-75
Query Start/End: Original strand, 6 - 163
Target Start/End: Complemental strand, 47486751 - 47486595
Alignment:
| Q |
6 |
gactaggctttaaagcaactacctagagaaaaggtccaggtggctacaaaattcggtatagccagaaacgatgattctggtatggtaatcaagggttcac |
105 |
Q |
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| T |
47486751 |
gactaggctttaaagcaactacctagagaaaaggtccaggtggctacaaaattcggtatagccagaagcgatgattctggtatggtaatcaa-ggttcac |
47486653 |
T |
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| Q |
106 |
cggattatgtgcgttcatgctgcgaagctagcttgaaacgtcttgatgtcgaatacat |
163 |
Q |
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| T |
47486652 |
cggattatgtgcgttcatgctgcgaagctagcttgaaacgtctcgatgtcgaatacat |
47486595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 6 - 163
Target Start/End: Complemental strand, 47477458 - 47477304
Alignment:
| Q |
6 |
gactaggctttaaagcaactacctagagaaaaggtccaggtggctacaaaattcggtatagccagaaacgatgattctggtatggtaatcaagggttcac |
105 |
Q |
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| T |
47477458 |
gactaggctttaaagcaactgcccagagaaaagatccaggtggctacaaaatttggtatatccagaagtggcggt---ggtatgggcatcaaaggttcac |
47477362 |
T |
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| Q |
106 |
cggattatgtgcgttcatgctgcgaagctagcttgaaacgtcttgatgtcgaatacat |
163 |
Q |
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| T |
47477361 |
cggagtatgtgcgttcaagctgcgaagctagcttgaaacgtctcaatgttgaatacat |
47477304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 47474040 - 47473970
Alignment:
| Q |
93 |
atcaagggttcaccggattatgtgcgttcatgctgcgaagctagcttgaaacgtcttgatgtcgaatacat |
163 |
Q |
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| T |
47474040 |
atcaagggttcacctgagtacgtgcgctcgtgttgtgaagctagcttgaaacgtctcgatgttgaatacat |
47473970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 47474136 - 47474077
Alignment:
| Q |
6 |
gactaggctttaaagcaactacctagagaaaaggtccaggtggctacaaaattcggtata |
65 |
Q |
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| T |
47474136 |
gactaggcattaaagcaattgcccagagaaaagatccagttggctacaaaatttggtata |
47474077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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