View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282-Insertion-47 (Length: 243)
Name: NF4282-Insertion-47
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282-Insertion-47 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 39587197 - 39586959
Alignment:
| Q |
5 |
ataggcaacattcatcaactcaaacacccacttcaccgtaccttccacactctctcacaaaaatacggtcaagtcttttccctacggttcggttcacgtt |
104 |
Q |
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| T |
39587197 |
ataggcaacattcatcaactcaaacacccacttcaccgtaccttccacactctctcacaaaaatacggtcaagtcttttccctacggttcggttcacgtt |
39587098 |
T |
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| Q |
105 |
ttgtcgtcgttgtttcatcaccttcggtcgtacacgaatgtttcacaaaaaatgacactattttagcaaaccggccacctcttctggcaggcaaacacat |
204 |
Q |
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| T |
39587097 |
ttgtcgtcgttgtttcatcaccttctgtcgtacacgaatgtttcacaaaaaatgacactattttagcaaaccggccacctcttctggcaggcaaacacat |
39586998 |
T |
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| Q |
205 |
cggatacaactacaccgcggtaaccgttgctccttatgg |
243 |
Q |
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| T |
39586997 |
cggatacaactacaccgcggtaaccgttgctccttatgg |
39586959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 5883937 - 5884045
Alignment:
| Q |
15 |
ttcatcaactcaaacacccacttcaccgtaccttccacactctctcacaaaaatacggtcaagtcttttccctacggttcggttcacgttttgtcgtcgt |
114 |
Q |
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|||| ||||||||||| ||||| |||| || |||||||| | ||||||||||| || ||| ||||||| || |||||||||| ||| | ||||| || |
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| T |
5883937 |
ttcaccaactcaaacaaccactccaccacacattccacaccttatcacaaaaatatggccaaatcttttctctttggttcggttctcgtctcgtcgttgt |
5884036 |
T |
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| Q |
115 |
tgtttcatc |
123 |
Q |
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| T |
5884037 |
tgtttcatc |
5884045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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