View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4282-Insertion-48 (Length: 245)

Name: NF4282-Insertion-48
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4282-Insertion-48
NF4282-Insertion-48
[»] chr1 (22 HSPs)
chr1 (6-245)||(50643993-50644234)
chr1 (6-66)||(33204313-33204373)
chr1 (8-63)||(15784410-15784465)
chr1 (6-67)||(11941353-11941414)
chr1 (6-66)||(2295187-2295247)
chr1 (17-64)||(6775089-6775136)
chr1 (6-66)||(2295282-2295342)
chr1 (6-66)||(3233934-3233994)
chr1 (15-67)||(27146173-27146225)
chr1 (10-57)||(6557067-6557114)
chr1 (20-67)||(7069384-7069431)
chr1 (10-65)||(42575389-42575444)
chr1 (29-67)||(6292606-6292644)
chr1 (29-63)||(10199330-10199364)
chr1 (6-60)||(38116002-38116056)
chr1 (34-67)||(3319864-3319897)
chr1 (6-66)||(19389992-19390053)
chr1 (10-51)||(29904846-29904887)
chr1 (6-51)||(38001686-38001731)
chr1 (10-51)||(38116192-38116233)
chr1 (10-66)||(37617384-37617440)
chr1 (11-51)||(51190934-51190974)
[»] chr2 (25 HSPs)
chr2 (6-67)||(30331842-30331903)
chr2 (16-66)||(18179050-18179100)
chr2 (6-67)||(3312168-3312229)
chr2 (6-66)||(4607016-4607076)
chr2 (10-66)||(27317474-27317530)
chr2 (7-63)||(31561664-31561720)
chr2 (6-66)||(43279444-43279506)
chr2 (6-64)||(42419884-42419942)
chr2 (9-66)||(2416407-2416464)
chr2 (7-44)||(14220773-14220810)
chr2 (9-66)||(15305768-15305825)
chr2 (6-66)||(449938-449998)
chr2 (7-66)||(15370242-15370302)
chr2 (6-66)||(42659130-42659190)
chr2 (31-73)||(3078520-3078562)
chr2 (12-66)||(7928217-7928271)
chr2 (16-66)||(10619139-10619189)
chr2 (7-64)||(12464394-12464451)
chr2 (6-66)||(22878188-22878249)
chr2 (29-66)||(30990358-30990395)
chr2 (6-66)||(2142745-2142805)
chr2 (10-62)||(19608556-19608608)
chr2 (6-66)||(24101019-24101079)
chr2 (10-66)||(31744393-31744449)
chr2 (6-66)||(42868400-42868460)
[»] chr8 (28 HSPs)
chr8 (6-66)||(38602418-38602478)
chr8 (6-66)||(30251373-30251433)
chr8 (10-66)||(35534532-35534588)
chr8 (6-51)||(1058011-1058056)
chr8 (10-66)||(10758176-10758232)
chr8 (6-66)||(29818863-29818923)
chr8 (6-66)||(36963273-36963333)
chr8 (7-62)||(6525909-6525964)
chr8 (6-65)||(40859703-40859762)
chr8 (6-64)||(43717855-43717913)
chr8 (7-67)||(9130237-9130297)
chr8 (6-66)||(38648442-38648502)
chr8 (6-66)||(43045644-43045704)
chr8 (6-45)||(28763459-28763498)
chr8 (6-76)||(1096581-1096651)
chr8 (14-64)||(12010979-12011029)
chr8 (10-64)||(12496993-12497047)
chr8 (6-60)||(18133747-18133801)
chr8 (29-67)||(18331828-18331866)
chr8 (6-64)||(32840907-32840965)
chr8 (14-51)||(900645-900682)
chr8 (6-43)||(41821566-41821603)
chr8 (29-66)||(43368619-43368656)
chr8 (30-66)||(10062060-10062096)
chr8 (11-51)||(12976308-12976348)
chr8 (6-66)||(26215550-26215610)
chr8 (24-64)||(36338128-36338168)
chr8 (6-78)||(42052134-42052206)
[»] chr6 (10 HSPs)
chr6 (6-66)||(24982796-24982856)
chr6 (6-51)||(2455079-2455124)
chr6 (6-66)||(10645304-10645364)
chr6 (8-66)||(21405073-21405131)
chr6 (9-66)||(848083-848139)
chr6 (15-66)||(33089605-33089657)
chr6 (20-66)||(835180-835226)
chr6 (12-66)||(35069531-35069585)
chr6 (29-66)||(4325224-4325261)
chr6 (13-62)||(32729066-32729115)
[»] chr4 (25 HSPs)
chr4 (6-65)||(15173223-15173282)
chr4 (9-74)||(27043740-27043806)
chr4 (10-66)||(39691068-39691124)
chr4 (10-66)||(49940086-49940142)
chr4 (7-66)||(44797972-44798031)
chr4 (7-66)||(53294033-53294092)
chr4 (9-66)||(13126495-13126552)
chr4 (7-60)||(40174649-40174702)
chr4 (6-66)||(8705032-8705092)
chr4 (10-66)||(18815118-18815174)
chr4 (6-66)||(29388705-29388765)
chr4 (6-66)||(54426134-54426194)
chr4 (17-67)||(41336862-41336912)
chr4 (6-66)||(17822784-17822844)
chr4 (6-66)||(21731575-21731635)
chr4 (6-66)||(35571550-35571610)
chr4 (9-64)||(52315118-52315173)
chr4 (31-73)||(17975249-17975291)
chr4 (12-66)||(40830949-40831002)
chr4 (20-66)||(42403942-42403988)
chr4 (6-66)||(6987660-6987721)
chr4 (29-66)||(22662170-22662207)
chr4 (29-66)||(22666649-22666686)
chr4 (38-66)||(679837-679865)
chr4 (6-58)||(25904150-25904202)
[»] chr7 (20 HSPs)
chr7 (9-66)||(34744122-34744179)
chr7 (6-65)||(49019960-49020019)
chr7 (6-64)||(9210912-9210970)
chr7 (29-66)||(24975990-24976027)
chr7 (6-66)||(4970711-4970771)
chr7 (6-66)||(19302482-19302542)
chr7 (6-66)||(33266405-33266465)
chr7 (15-66)||(34036017-34036068)
chr7 (6-64)||(18765375-18765433)
chr7 (8-64)||(8427105-8427162)
chr7 (6-67)||(22283564-22283625)
chr7 (6-51)||(46280214-46280259)
chr7 (7-66)||(33128843-33128902)
chr7 (11-66)||(44822054-44822109)
chr7 (6-64)||(45338544-45338602)
chr7 (6-67)||(35056766-35056827)
chr7 (35-67)||(1418539-1418571)
chr7 (6-66)||(18962502-18962562)
chr7 (11-51)||(21196364-21196404)
chr7 (34-66)||(40598404-40598436)
[»] chr5 (23 HSPs)
chr5 (10-66)||(3932595-3932651)
chr5 (9-66)||(16937802-16937859)
chr5 (6-66)||(6521169-6521229)
chr5 (6-58)||(12425664-12425716)
chr5 (6-66)||(34736446-34736506)
chr5 (7-67)||(39594899-39594959)
chr5 (7-67)||(41419411-41419471)
chr5 (7-67)||(41534530-41534590)
chr5 (13-80)||(1773011-1773078)
chr5 (6-65)||(9107181-9107240)
chr5 (6-51)||(15015934-15015979)
chr5 (6-66)||(7705917-7705977)
chr5 (10-66)||(42568949-42569005)
chr5 (8-58)||(40426858-40426908)
chr5 (10-63)||(11064761-11064814)
chr5 (6-66)||(32941560-32941621)
chr5 (6-66)||(42181004-42181065)
chr5 (6-66)||(7985060-7985120)
chr5 (6-66)||(12433092-12433152)
chr5 (30-66)||(14257563-14257599)
chr5 (15-63)||(22209746-22209794)
chr5 (10-66)||(32010040-32010096)
chr5 (6-66)||(32942685-32942745)
[»] chr3 (21 HSPs)
chr3 (10-66)||(25447164-25447220)
chr3 (6-65)||(584137-584196)
chr3 (6-66)||(43046756-43046815)
chr3 (11-66)||(39980825-39980880)
chr3 (9-51)||(13715506-13715548)
chr3 (10-64)||(18405752-18405806)
chr3 (6-66)||(42799885-42799946)
chr3 (17-66)||(46478769-46478818)
chr3 (10-66)||(20170633-20170689)
chr3 (6-66)||(26990144-26990204)
chr3 (6-62)||(31365111-31365167)
chr3 (19-66)||(16072960-16073007)
chr3 (6-64)||(21367758-21367816)
chr3 (6-64)||(32095128-32095186)
chr3 (6-66)||(32582831-32582888)
chr3 (6-56)||(36783281-36783331)
chr3 (16-73)||(24684734-24684791)
chr3 (22-67)||(34235011-34235056)
chr3 (6-66)||(402461-402521)
chr3 (10-50)||(3845498-3845538)
chr3 (6-66)||(9832674-9832734)
[»] scaffold0057 (2 HSPs)
scaffold0057 (6-60)||(44124-44178)
scaffold0057 (6-51)||(24712-24757)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 50644234 - 50643993
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaacccttaagtttatgtataccaaa-acatgcatactaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50644234 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaataagtcaatccaaacaacccttaagtttatgtataccaaagacatgcatactaat 50644135  T
Q  105 agatactctaggttttgtttgtgaatggtttgtttcgtacgaccatatttgttcttcaatgacatcattcacagccagcaaggaactatcagaagcaacc 204  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50644134 agatactctaggttttgtttgtgaatggtttgtttcttacgaccatatttgttcttcaatgacatcattcacagccagcaaggaactatcagaagcaacc 50644035  T
Q  205 cacaaccatgtttcgtacgg-cccctgtatagtggatgacaa 245  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  50644034 cacaaccatgtttcgtacggtcccctgtatagtggatgacaa 50643993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 33204373 - 33204313
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| |||| ||| |||||    
T  33204373 ctcccaaacagtctcacaaaacttatgtcagtagataagctcaaataagtcgatctaaaca 33204313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 15784410 - 15784465
Alignment:
Q  8 cccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaa 63  Q
    |||||||||||| ||||||| ||||||||||||||||||||||| |||| ||||||    
T  15784410 cccaaacagtcttacaaaacttatgttagtagataagctcaaataagtcgatccaa 15784465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 11941353 - 11941414
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    |||||||||||||||||| |||||||| ||||||| ||| |||||| ||||||| |||||||    
T  11941353 ctcccaaacagtctcacataacatatgctagtagaaaagttcaaataagtcaatacaaacaa 11941414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 2295187 - 2295247
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||| || |||| ||||||    
T  2295187 ctcccaaacagtctcacaaaacttatgccagtagataagctcaaataagccaattcaaaca 2295247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 6775089 - 6775136
Alignment:
Q  17 tctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    |||||||||||||||||||||||||||||| || | ||||||||||||    
T  6775089 tctcacaaaacatatgttagtagataagctgaagtaagtcaatccaaa 6775136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 2295282 - 2295342
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||| ||||||| ||||| || || ||||||||||||||||| || |||||||||||    
T  2295282 ctcccaaatagtctcagaaaacttaagtcagtagataagctcaaataagccaatccaaaca 2295342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 3233994 - 3233934
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||| |||||||||||||||| || |  | ||||||||||||||| ||||||||||||||    
T  3233994 ctccctaacagtctcacaaaacttacggcactagataagctcaaataagtcaatccaaaca 3233934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 27146225 - 27146173
Alignment:
Q  15 agtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    ||||||||||||| ||||  | ||||||||||||||| |||||||||||||||    
T  27146225 agtctcacaaaacttatgccaatagataagctcaaatcagtcaatccaaacaa 27146173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 6557067 - 6557114
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtca 57  Q
    |||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  6557067 caaatagtctcacaaaacttatgttagtagataagttcaaataagtca 6557114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 7069384 - 7069431
Alignment:
Q  20 cacaaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    |||||||| || |||||| ||||||||||||| |||||||||||||||    
T  7069384 cacaaaacttacgttagttgataagctcaaataagtcaatccaaacaa 7069431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 42575444 - 42575389
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaac 65  Q
    ||||||| |||||||||  |||| |||||||||||||||||| || ||||||||||    
T  42575444 caaacagcctcacaaaatttatgctagtagataagctcaaataaggcaatccaaac 42575389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 6292606 - 6292644
Alignment:
Q  29 tatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  6292606 tatgtcagtagataagctcaaataagtcaatccaaacaa 6292644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 10199364 - 10199330
Alignment:
Q  29 tatgttagtagataagctcaaattagtcaatccaa 63  Q
    ||||||||||||||||||||||| |||||||||||    
T  10199364 tatgttagtagataagctcaaataagtcaatccaa 10199330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 38116056 - 38116002
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatc 60  Q
    |||| |||| |||||||||||| || || ||||||||||||||||| ||||||||    
T  38116056 ctccaaaaccgtctcacaaaacttacgtcagtagataagctcaaataagtcaatc 38116002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 3319897 - 3319864
Alignment:
Q  34 tagtagataagctcaaattagtcaatccaaacaa 67  Q
    |||||||||||||||||| |||||||||||||||    
T  3319897 tagtagataagctcaaataagtcaatccaaacaa 3319864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 19389992 - 19390053
Alignment:
Q  6 ctcccaaacagtctcacaaa-acatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||| ||||||  || |||||||||||||||| ||| |||||||||| ||||||    
T  19389992 ctcccaaacagtgtcacaactacttatgttagtagataagttcacattagtcaatacaaaca 19390053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 29904846 - 29904887
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  29904846 caaacagtctcacaaaacttatgcaagtagataagctcaaat 29904887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 38001686 - 38001731
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    |||||||||||||||||||||| ||||| ||| ||||| |||||||    
T  38001686 ctcccaaacagtctcacaaaacttatgtcagttgataaactcaaat 38001731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 38116233 - 38116192
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    |||| ||||||||||||| |||| ||||||||||||||||||    
T  38116233 caaatagtctcacaaaacctatgctagtagataagctcaaat 38116192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 37617440 - 37617384
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||| || |  | ||||||| ||||||| ||||||||||||||    
T  37617440 caaacagtctcacaaaacttacggcaatagataaactcaaataagtcaatccaaaca 37617384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 51190934 - 51190974
Alignment:
Q  11 aaacagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    |||||||||| |||||||||||| |||| ||||||||||||    
T  51190934 aaacagtctcgcaaaacatatgtcagtatataagctcaaat 51190974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 30331842 - 30331903
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    |||||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||||||    
T  30331842 ctcccaaacagtctcacaaaacttatgtcagtagataagctgaaataagtcaatccaaacaa 30331903  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 18179050 - 18179100
Alignment:
Q  16 gtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  18179050 gtctcacaaaacttatgttagtagataagctcaaataagtcaatccaaaca 18179100  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 3312168 - 3312229
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    ||||| |||||||||||||||| || || ||||||||||||||||| || ||||||||||||    
T  3312168 ctccccaacagtctcacaaaacttacgtcagtagataagctcaaataagccaatccaaacaa 3312229  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 4607016 - 4607076
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||| ||||||||||||| ||| || |||||||||||||||| || |||||||||||    
T  4607016 ctcccaaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaaca 4607076  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 27317474 - 27317530
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||| ||||| |||||  |||||||||||||||| ||||||||||||||    
T  27317474 caaacagtctcataaaacttatgtcggtagataagctcaaataagtcaatccaaaca 27317530  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 31561720 - 31561664
Alignment:
Q  7 tcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaa 63  Q
    ||||||||||| | ||||||| ||||||||||||||| ||||||| |||||||||||    
T  31561720 tcccaaacagttttacaaaacttatgttagtagataatctcaaataagtcaatccaa 31561664  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 43279506 - 43279444
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctca--aattagtcaatccaaaca 66  Q
    |||||||||||||||||||||| |||| ||||||||||||| |  |||| |||||||||||||    
T  43279506 ctcccaaacagtctcacaaaacttatgctagtagataagctaaataattcgtcaatccaaaca 43279444  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 42419884 - 42419942
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    |||||||||||||||| ||||| ||||| || |||||| ||||||| ||||||||||||    
T  42419884 ctcccaaacagtctcaaaaaacttatgtcagaagataaactcaaataagtcaatccaaa 42419942  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 2416407 - 2416464
Alignment:
Q  9 ccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||| |||| ||||||||| ||||||||||||||| ||||||| |||||||| |||||    
T  2416407 ccaagcagtttcacaaaacttatgttagtagataaactcaaataagtcaatctaaaca 2416464  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 14220810 - 14220773
Alignment:
Q  7 tcccaaacagtctcacaaaacatatgttagtagataag 44  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  14220810 tcccaaacagtctcacaaaacttatgttagtagataag 14220773  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 15305768 - 15305825
Alignment:
Q  9 ccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||| ||||||||| ||||| | ||||||||||||||| || |||||||||||    
T  15305768 ccaaacagtttcacaaaacttatgtcaatagataagctcaaataagccaatccaaaca 15305825  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 449938 - 449998
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||| ||||| ||||| |||| |||||||||||||||||| ||| ||| ||||||    
T  449938 ctcccaaacaatctcataaaacttatgctagtagataagctcaaataagttaatgcaaaca 449998  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 15370302 - 15370242
Alignment:
Q  7 tcccaaacagtctcacaaaa-catatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||||  | ||||  ||||||||||||||||| ||||||||||||||    
T  15370302 tcccaaacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaaca 15370242  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 42659190 - 42659130
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||||||| ||||  |||| |||||||||||| || ||| |||||||    
T  42659190 ctcccaaacagtctcacaaaacttatgccagtaaataagctcaaataagccaacccaaaca 42659130  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 3078562 - 3078520
Alignment:
Q  31 tgttagtagataagctcaaattagtcaatccaaacaaccctta 73  Q
    |||| |||||||||||||||| |||||||||||||| ||||||    
T  3078562 tgttggtagataagctcaaataagtcaatccaaacagccctta 3078520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 7928271 - 7928217
Alignment:
Q  12 aacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||| ||| ||||| | ||||||||||||||| || |||||||||||    
T  7928271 aacagtctcacacaacttatgtcaatagataagctcaaataagccaatccaaaca 7928217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 10619189 - 10619139
Alignment:
Q  16 gtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||| | ||| ||||||||| ||||||| ||||||||||||||    
T  10619189 gtctcacaaaacttgtgtcagtagataaactcaaatgagtcaatccaaaca 10619139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 12464451 - 12464394
Alignment:
Q  7 tcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    ||||||||| ||||||||||| ||||||||||||||  ||||||| || ||| |||||    
T  12464451 tcccaaacattctcacaaaacttatgttagtagatacactcaaataagccaaaccaaa 12464394  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 22878188 - 22878249
Alignment:
Q  6 ctcccaaacagtctcacaaaa-catatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||||   | ||||| ||| ||||||||||||| ||||||||||||||    
T  22878188 ctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaaca 22878249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 30990395 - 30990358
Alignment:
Q  29 tatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||||||||||| || |||||||||||    
T  30990395 tatgttagtagataagctcaaataagccaatccaaaca 30990358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 2142745 - 2142805
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||| ||||| ||||   |||||||| ||||||| |||||| |||||||    
T  2142745 ctcccaaacagtctcataaaacttatgcatgtagataaactcaaataagtcaaaccaaaca 2142805  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 19608608 - 19608556
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatcca 62  Q
    |||||||||||| ||||| ||||| ||||||||| ||||||||| || |||||    
T  19608608 caaacagtctcataaaacctatgtcagtagataaactcaaattaatcgatcca 19608556  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 24101019 - 24101079
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||||||| |||| || || ||||| |||||| |||| || ||||||    
T  24101019 ctcccaaacagtctcacaaaacttatgataatatataagttcaaataagtcgattcaaaca 24101079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 31744393 - 31744449
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||| ||||| |||||  |||||||||| ||||| || |||||||||||    
T  31744393 caaacagtctcagaaaacttatgtcggtagataagcccaaataagccaatccaaaca 31744449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 42868460 - 42868400
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||| |||| |||| ||||  | ||||||||||||||| || |||||||||||    
T  42868460 ctcccaaacagtgtcacgaaacgtatgccaatagataagctcaaataaggcaatccaaaca 42868400  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 38602418 - 38602478
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  38602418 ctcccaaacagcctcacaaaacttatgtcagtagataagctcaaataagtcaatccaaaca 38602478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 30251433 - 30251373
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||| || |||||||||||    
T  30251433 ctcccaaacagtctcacgaaacttatgtcagtagataagctcaaataagccaatccaaaca 30251373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 35534588 - 35534532
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||    
T  35534588 caaacagtctcacaaaacttatgttagtagataagctcaaataagtcattctaaaca 35534532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 1058056 - 1058011
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||    
T  1058056 ctcccaaacagtctcacaaaacttatgtaagtagataagctcaaat 1058011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 10758232 - 10758176
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||| |||||||| ||||||| |||||| ||||||| ||||||    
T  10758232 caaacagtctcacaaaacttatgttagcagataagttcaaataagtcaattcaaaca 10758176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 29818923 - 29818863
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||||  | |||||||||||    
T  29818923 ctccgaaacagtctcacaaaacttatgatagtagataagctcaaatatgccaatccaaaca 29818863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 36963333 - 36963273
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||||||| ||||  ||||||| ||||||||| || |||||||||||    
T  36963333 ctcccaaacagtctcacaaaacttatgccagtagattagctcaaataagccaatccaaaca 36963273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 6525909 - 6525964
Alignment:
Q  7 tcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatcca 62  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||| || |||||||    
T  6525909 tcccaaacagtcacacaaaacttatgttagtagataaactcaaataagacaatcca 6525964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 40859762 - 40859703
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaac 65  Q
    |||| |||||| |||||||||| |||||||| |||||||||||||| || ||||||||||    
T  40859762 ctccaaaacagcctcacaaaacttatgttagcagataagctcaaataagccaatccaaac 40859703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 43717913 - 43717855
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    |||||||| ||||||||||||| ||||| | ||||||||||||||| || |||||||||    
T  43717913 ctcccaaatagtctcacaaaacttatgtcaatagataagctcaaataagccaatccaaa 43717855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 9130297 - 9130237
Alignment:
Q  7 tcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    ||||||| ||||||||||||| ||||  ||||||||||||||||| ||  |||||||||||    
T  9130297 tcccaaatagtctcacaaaacttatgccagtagataagctcaaataagctaatccaaacaa 9130237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 38648442 - 38648502
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||||||| ||||| ||||||||| || |||| || |||||| ||||    
T  38648442 ctcccaaacagtctcacaaaacttatgtcagtagataatcttaaataagccaatcctaaca 38648502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 43045704 - 43045644
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||| ||||||||||||||| | |||| ||||||||||||| |||| || |||||||||||    
T  43045704 ctccaaaacagtctcacaaatcttatgctagtagataagcttaaataagccaatccaaaca 43045644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 28763459 - 28763498
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagc 45  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  28763459 ctcccaaacagtctcacaaaacttatgttactagataagc 28763498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 1096581 - 1096651
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaacccttaagt 76  Q
    |||||||| | ||||||||||| ||||| | || |||| ||||||| ||||||||||||||  ||||||||    
T  1096581 ctcccaaaaaatctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgccttaagt 1096651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 12010979 - 12011029
Alignment:
Q  14 cagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    |||||||  ||||||||||| | ||||||||||||||| ||||||||||||    
T  12010979 cagtctcgtaaaacatatgtaattagataagctcaaataagtcaatccaaa 12011029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 12497047 - 12496993
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    |||||||||||||||||| ||||  || |||||||||||||| | ||||||||||    
T  12497047 caaacagtctcacaaaacttatgccaggagataagctcaaataaatcaatccaaa 12496993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 18133747 - 18133801
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatc 60  Q
    |||||||||||||||||||||| |||  ||||||||||||| |||| || |||||    
T  18133747 ctcccaaacagtctcacaaaacttatactagtagataagcttaaataagccaatc 18133801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 18331828 - 18331866
Alignment:
Q  29 tatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  18331828 tatgttagtagataagatcaaataagtcaatccaaacaa 18331866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 32840965 - 32840907
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    ||||||||||||||| |||||| | ||| ||||||||||||||| | ||||||| ||||    
T  32840965 ctcccaaacagtctcgcaaaacttgtgtgagtagataagctcaagtaagtcaattcaaa 32840907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 900682 - 900645
Alignment:
Q  14 cagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  900682 cagtctcacaaaacatatgtcagtatataagctcaaat 900645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 41821566 - 41821603
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataa 43  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  41821566 ctcccaaagagtctcacaaaacatatgtgagtagataa 41821603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 43368656 - 43368619
Alignment:
Q  29 tatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  43368656 tatgttagtagataagatcaaataagtcaatccaaaca 43368619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 10062096 - 10062060
Alignment:
Q  30 atgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||||||| || |||||||||||    
T  10062096 atgttagtagataagctcaaataagccaatccaaaca 10062060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 12976308 - 12976348
Alignment:
Q  11 aaacagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    ||||||||||||||| | |||| ||||||||||||||||||    
T  12976308 aaacagtctcacaaaccttatgctagtagataagctcaaat 12976348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 26215550 - 26215610
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||| ||||||||||| |  ||| ||| ||||| |||||| ||||||||||||||    
T  26215550 ctcccaaacaatctcacaaaacttgcgtttgtaaataagttcaaataagtcaatccaaaca 26215610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 36338168 - 36338128
Alignment:
Q  24 aaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    ||||||||||||||||||| ||| |||| ||||||||||||    
T  36338168 aaacatatgttagtagatatgcttaaataagtcaatccaaa 36338128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 42052134 - 42052206
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaacccttaagttt 78  Q
    |||||||||||||  ||||||| ||||  |||||||||| | | || ||||||||||||||| ||| ||||||    
T  42052134 ctcccaaacagtccgacaaaacttatgccagtagataagtttagataagtcaatccaaacaaacctcaagttt 42052206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 24982796 - 24982856
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||| ||||||||||||||||| |||||||||||||||| || ||||||||||||||||||    
T  24982796 ctccaaaacagtctcacaaaacttatgttagtagataagatctaattagtcaatccaaaca 24982856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 2455079 - 2455124
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||    
T  2455079 ctcccaaacagtctcacaaaacttatgttagtagataagttcaaat 2455124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 10645364 - 10645304
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||| ||||||| ||||| | ||||||| |||||||||| |||||||||||    
T  10645364 ctcccaaacagtcttacaaaacttatgtcattagataacctcaaattagccaatccaaaca 10645304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 21405131 - 21405073
Alignment:
Q  8 cccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||| | ||||||||||| ||||| |||| |||||||||||| ||||||||||||||    
T  21405131 cccaaatattctcacaaaacttatgtcagtatataagctcaaataagtcaatccaaaca 21405073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 848083 - 848139
Alignment:
Q  9 ccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||||||| |||| || ||||||||||||||| || |||||||||||    
T  848083 ccaaacagtctcacaaaacttatgcta-tagataagctcaaataaggcaatccaaaca 848139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 33089605 - 33089657
Alignment:
Q  15 agtctcacaaa-acatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||| |||||||    
T  33089605 agtctcacaaatacatatgtcagtagataagctcaaataagtcaacccaaaca 33089657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 835226 - 835180
Alignment:
Q  20 cacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||| |||| |||||||||||||||||| || |||||||||||    
T  835226 cacaaaacttatgctagtagataagctcaaataaggcaatccaaaca 835180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 35069585 - 35069531
Alignment:
Q  12 aacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||| ||||||| ||||| ||||||||||||||||| || |||| ||||||    
T  35069585 aacagtcttacaaaacttatgtcagtagataagctcaaataagccaatacaaaca 35069531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 4325261 - 4325224
Alignment:
Q  29 tatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||| || |||||||||||||||||||    
T  4325261 tatgttagtagataaactaaaattagtcaatccaaaca 4325224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 32729115 - 32729066
Alignment:
Q  13 acagtctcacaaaacatatgttagtagataagctcaaattagtcaatcca 62  Q
    ||||||||||||||| || ||| |||||||| ||||||| ||||||||||    
T  32729115 acagtctcacaaaacttaagtttgtagataaactcaaataagtcaatcca 32729066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 15173282 - 15173223
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaac 65  Q
    |||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||||||    
T  15173282 ctcccaaacagtctcacaaaacttatgtcagtagataagttcaaataagtcaatccaaac 15173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 27043806 - 27043740
Alignment:
Q  9 ccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca-acccttaa 74  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||    
T  27043806 ccaaacagtttcacaaaacttatgtcagtagataagctcaaataagtcaatccaaacagacccttaa 27043740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 39691124 - 39691068
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||    
T  39691124 caaacagtctcacaaaacttatgctagtagataagctcaaataagtcaattcaaaca 39691068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 49940142 - 49940086
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||    
T  49940142 caaacagtctcacaaaacttatgttagcaggtaagctcaaataagtcaatccaaaca 49940086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 44797972 - 44798031
Alignment:
Q  7 tcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||||||||| ||||| |||||||||||| |||| || |||||||||||    
T  44797972 tcccaaacagtctcacaaaacttatgtcagtagataagcttaaatcagccaatccaaaca 44798031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 53294092 - 53294033
Alignment:
Q  7 tcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||| |||||||  |||| ||||||||||| ||||||||||||||||||||    
T  53294092 tcccaaacagtcttacaaaactcatgtcagtagataagcacaaattagtcaatccaaaca 53294033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 13126552 - 13126495
Alignment:
Q  9 ccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||||||| ||||||||||| |||||| |||| || |||||||||||    
T  13126552 ccaaacagtctcacaaaacttatgttagtaggtaagctaaaataagccaatccaaaca 13126495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 40174649 - 40174702
Alignment:
Q  7 tcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatc 60  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||    
T  40174649 tcccaaacagtctcacaaaacttatgttagtagataaactcaaataaatcaatc 40174702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 8705032 - 8705092
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||| |||||||||||||| ||||| | ||||||||||||||| || |||||||||||    
T  8705032 ctcccaatcagtctcacaaaacttatgtcaatagataagctcaaatgagccaatccaaaca 8705092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 18815118 - 18815174
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||| |||| |||||| ||||||||||| || |||||||||||    
T  18815118 caaacagtctcacaaaacttatgctagtaggtaagctcaaataagccaatccaaaca 18815174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 29388705 - 29388765
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||| ||| ||||||| |||||||||||||||| |||||| |||||| |||||||    
T  29388705 ctcccaaacaatcttacaaaacttatgttagtagataaggtcaaataagtcaacccaaaca 29388765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 54426134 - 54426194
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||| |||||||||||||| ||||  ||||||||||||||||| || |||||||||||    
T  54426134 ctcccaagcagtctcacaaaacttatgccagtagataagctcaaataagccaatccaaaca 54426194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 41336862 - 41336912
Alignment:
Q  17 tctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    ||||||||||| ||||| ||||||||| ||||||| |||||||||||||||    
T  41336862 tctcacaaaacttatgtgagtagataaactcaaataagtcaatccaaacaa 41336912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 17822844 - 17822784
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||| ||| ||||||||| ||| ||||| ||||||||||||||||| ||| ||||||||||    
T  17822844 ctcctaaatagtctcacagaacttatgtcagtagataagctcaaataagttaatccaaaca 17822784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 21731635 - 21731575
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||| ||||||||||| ||||| |||||||| |||||||| |  |||||||||||    
T  21731635 ctcccaaacaatctcacaaaacttatgtcagtagatatgctcaaataaaccaatccaaaca 21731575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 35571610 - 35571550
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||  || |||||||| |||| |||||||||||||||||| || |||||||||||    
T  35571610 ctcccaaactatcccacaaaacttatgctagtagataagctcaaataagccaatccaaaca 35571550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 52315173 - 52315118
Alignment:
Q  9 ccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    ||||||| ||||||||||| || || ||||||||| ||||||| ||||||||||||    
T  52315173 ccaaacaatctcacaaaacttacgtcagtagataaactcaaataagtcaatccaaa 52315118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 17975291 - 17975249
Alignment:
Q  31 tgttagtagataagctcaaattagtcaatccaaacaaccctta 73  Q
    |||| |||||||||||||||| |||||||||||||| ||||||    
T  17975291 tgttggtagataagctcaaataagtcaatccaaacagccctta 17975249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 40831002 - 40830949
Alignment:
Q  12 aacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||| ||||  | |||||||||||||||||| |||||||||||    
T  40831002 aacagtctcacaaaacttatgcaa-tagataagctcaaattagccaatccaaaca 40830949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 42403988 - 42403942
Alignment:
Q  20 cacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||| ||||| ||| ||||||||||||| ||||||||||||||    
T  42403988 cacaaaacttatgtcagttgataagctcaaataagtcaatccaaaca 42403942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 6987721 - 6987660
Alignment:
Q  6 ctcccaaacagtctcacaaa-acatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||||| || |||| |||||||||| ||||| | ||||||| ||||||    
T  6987721 ctcccaaacagtctcacaaacacttatgctagtagataaactcaattaagtcaatacaaaca 6987660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 22662207 - 22662170
Alignment:
Q  29 tatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  22662207 tatgttagtagataaactcaaataagtcaatccaaaca 22662170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 22666686 - 22666649
Alignment:
Q  29 tatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  22666686 tatgttagtagataaactcaaataagtcaatccaaaca 22666649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 679837 - 679865
Alignment:
Q  38 agataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||||||||||||||    
T  679837 agataagctcaaattagtcaatccaaaca 679865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 25904202 - 25904150
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaa 58  Q
    |||||||||||||||||||||  ||||| | | ||||||||||||| ||||||    
T  25904202 ctcccaaacagtctcacaaaatttatgtcattggataagctcaaataagtcaa 25904150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 34744122 - 34744179
Alignment:
Q  9 ccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||    
T  34744122 ccaaacagtctcacaaatcttatgttagtagataagctcaaattattcaattcaaaca 34744179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 49019960 - 49020019
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaac 65  Q
    |||||||||||||||||||||||||||| || |||||||||  ||| |||||||||||||    
T  49019960 ctcccaaacagtctcacaaaacatatgtcagcagataagctacaataagtcaatccaaac 49020019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 9210912 - 9210970
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    |||||||||||||||| ||||| ||| | ||||||||||||||||| ||||||||||||    
T  9210912 ctcccaaacagtctcagaaaacttatatcagtagataagctcaaataagtcaatccaaa 9210970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 24975990 - 24976027
Alignment:
Q  29 tatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24975990 tatgttagtagataagctcaaattagtcaatccaaaca 24976027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 4970771 - 4970711
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||||||| || ||||| |  |||||||||||||| ||||||||||||||    
T  4970771 ctcccaaacagtctcacaagacttatgtcacgagataagctcaaataagtcaatccaaaca 4970711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 19302542 - 19302482
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||| | ||||||||||| ||||| ||||||||||||||||| ||||||| ||||||    
T  19302542 ctcccaaatattctcacaaaacttatgtcagtagataagctcaaataagtcaattcaaaca 19302482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 33266465 - 33266405
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||| ||| ||||||||| |||||  |||||||||||||||| ||||||||||||||    
T  33266465 ctcccaaatagtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 33266405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 34036017 - 34036068
Alignment:
Q  15 agtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||| ||||||    
T  34036017 agtctcacaatacatatgtcagtagataagctcaaataagtcaattcaaaca 34036068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 18765375 - 18765433
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||| |  |||||||||    
T  18765375 ctcccaaacagtctcacaaaacttatgtcaatagataagctcaaataaagcaatccaaa 18765433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 8427105 - 8427162
Alignment:
Q  8 cccaaacagtctcacaaa-acatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    |||||||||||||||||  || ||||||||||||||||||||||| | ||||||||||    
T  8427105 cccaaacagtctcacaagtacttatgttagtagataagctcaaataaatcaatccaaa 8427162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 22283625 - 22283564
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    |||| ||||||||||||||||  ||||  |||||||||| |||||| |||||||||||||||    
T  22283625 ctcctaaacagtctcacaaaatttatgacagtagataagttcaaataagtcaatccaaacaa 22283564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 46280259 - 46280214
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    |||||||||||||||||||||||||||| || |||||| |||||||    
T  46280259 ctcccaaacagtctcacaaaacatatgtcagcagataaactcaaat 46280214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 33128843 - 33128902
Alignment:
Q  7 tcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||| ||| ||||||| || ||||| | |||||||||||| ||||||||||||||    
T  33128843 tcccaaacaatcttacaaaacttaagttagcatataagctcaaataagtcaatccaaaca 33128902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 44822054 - 44822109
Alignment:
Q  11 aaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||| ||||||||||| ||||| || |||||| ||||||| ||||||||||||||    
T  44822054 aaacaatctcacaaaacttatgtcagcagataaactcaaataagtcaatccaaaca 44822109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 45338544 - 45338602
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    |||||||||||||||| ||||| |||| |||| ||||| ||||||| || |||||||||    
T  45338544 ctcccaaacagtctcaaaaaacttatgctagtggataaactcaaataagccaatccaaa 45338602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 35056766 - 35056827
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    |||||||||||| | || |||| |||||||||||||||||||| |  | |||||||||||||    
T  35056766 ctcccaaacagttttactaaacgtatgttagtagataagctcagaaaactcaatccaaacaa 35056827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 1418539 - 1418571
Alignment:
Q  35 agtagataagctcaaattagtcaatccaaacaa 67  Q
    ||||||||||||||||| |||||||||||||||    
T  1418539 agtagataagctcaaataagtcaatccaaacaa 1418571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 18962562 - 18962502
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||| ||||||||| ||||||| ||||| |||||||||| || ||| | ||||||||||||    
T  18962562 ctccaaaacagtctaacaaaacttatgtcagtagataagatcgaataactcaatccaaaca 18962502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 21196364 - 21196404
Alignment:
Q  11 aaacagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    ||||||||||||||||| |||| ||||| ||||||||||||    
T  21196364 aaacagtctcacaaaacttatgctagtatataagctcaaat 21196404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 40598436 - 40598404
Alignment:
Q  34 tagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||| ||||||||||||||    
T  40598436 tagtagataagctcaaataagtcaatccaaaca 40598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 3932651 - 3932595
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||| | ||||||  ||||||||||||||||||||||||||||||    
T  3932651 caaacagtctcacaaagcttatgttgttagataagctcaaattagtcaatccaaaca 3932595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 16937859 - 16937802
Alignment:
Q  9 ccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||| ||||||||||| |||| |||||||||||||||||| || |||||||||||    
T  16937859 ccaaacactctcacaaaacttatgctagtagataagctcaaataagccaatccaaaca 16937802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 6521169 - 6521229
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||| ||||||||||||||||| ||||| | ||||| ||| ||||||||||||||    
T  6521169 ctcccaaacaatctcacaaaacatatgtcagtagttcagctctaataagtcaatccaaaca 6521229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 12425664 - 12425716
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaa 58  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||| ||||||    
T  12425664 ctcccaaacagtctcacaaaacttatgacagtagataagctcaaataagtcaa 12425716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 34736506 - 34736446
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||| |||||||||||| ||||| |  |||||||||||||| ||||||||||||||    
T  34736506 ctcccaaactgtctcacaaaacttatgtcaccagataagctcaaataagtcaatccaaaca 34736446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 39594899 - 39594959
Alignment:
Q  7 tcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    ||||||||| ||| ||||||| |||||  |||||||||||||||| |||||||||||||||    
T  39594899 tcccaaacaatctaacaaaacttatgtcggtagataagctcaaataagtcaatccaaacaa 39594959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 41419411 - 41419471
Alignment:
Q  7 tcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    ||||||||| ||||||||||  ||||| ||||||| ||||||||| |||||||||||||||    
T  41419411 tcccaaacaatctcacaaaatttatgtcagtagattagctcaaataagtcaatccaaacaa 41419471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 41534530 - 41534590
Alignment:
Q  7 tcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    ||||||||| ||||||||||  ||||| ||||||| ||||||||| |||||||||||||||    
T  41534530 tcccaaacaatctcacaaaatttatgtcagtagattagctcaaataagtcaatccaaacaa 41534590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 1773078 - 1773011
Alignment:
Q  13 acagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaacccttaagtttat 80  Q
    ||||||||||||||| ||||  |||||||||||| |||| || ||||||||||| ||||||| |||||    
T  1773078 acagtctcacaaaacttatggaagtagataagctaaaataagccaatccaaacagcccttaattttat 1773011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 9107181 - 9107240
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaac 65  Q
    |||||||||| ||||||||||| ||||| | ||||||| ||||||| |||||||||||||    
T  9107181 ctcccaaacattctcacaaaacttatgtcactagataaactcaaataagtcaatccaaac 9107240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 15015934 - 15015979
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||    
T  15015934 ctcccaaacagtctcacaaagcttatgtcagtagataagctcaaat 15015979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 7705977 - 7705917
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||| ||  ||||||||| |||| ||||||||| |||||||| ||||||||||||||    
T  7705977 ctcccaaagagcgtcacaaaacttatgctagtagatatgctcaaataagtcaatccaaaca 7705917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 42569005 - 42568949
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||| |||| |||||||||  |||| ||||||| ||||||||||||||    
T  42569005 caaacagtctcacgaaacttatgttagtgcataaactcaaataagtcaatccaaaca 42568949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 40426858 - 40426908
Alignment:
Q  8 cccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaa 58  Q
    |||||||||||||||||||  ||||| | ||||||||||||||| ||||||    
T  40426858 cccaaacagtctcacaaaatttatgtcattagataagctcaaataagtcaa 40426908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 11064761 - 11064814
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaa 63  Q
    |||||| ||||||||||| |||||| |||||||| ||||||| | |||||||||    
T  11064761 caaacaatctcacaaaacttatgttggtagataaactcaaataaatcaatccaa 11064814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 32941560 - 32941621
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataa-gctcaaattagtcaatccaaaca 66  Q
    ||||||||| |||||||| ||| ||||| ||||||||| |||| ||| ||||||||||||||    
T  32941560 ctcccaaacggtctcacagaacttatgtcagtagataaagctctaataagtcaatccaaaca 32941621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 42181065 - 42181004
Alignment:
Q  6 ctcccaaacagtctcacaaaa-catatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||  ||||||||||  |||||| ||||| ||||| |||||||||||||||||||||    
T  42181065 ctcccaaattgtctcacaaatgcatatgctagtaaataagttcaaattagtcaatccaaaca 42181004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 7985060 - 7985120
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||| ||||||||||| | ||||  ||||||||| |||||||||| ||||| |||||    
T  7985060 ctcccaaatagtctcacaaagcttatgccagtagataatctcaaattagccaatctaaaca 7985120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 12433152 - 12433092
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||| ||||||||||| ||||  |||| ||||| |||||| || |||||||||||    
T  12433152 ctcccaaacaatctcacaaaacctatgccagtaaataagttcaaataagccaatccaaaca 12433092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 14257563 - 14257599
Alignment:
Q  30 atgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  14257563 atgttagtagataagttcaaataagtcaatccaaaca 14257599  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 22209794 - 22209746
Alignment:
Q  15 agtctcacaaaacatatgttagtagataagctcaaattagtcaatccaa 63  Q
    ||||||| ||||| ||||  ||||||||||||||||| |||||||||||    
T  22209794 agtctcagaaaacttatgccagtagataagctcaaataagtcaatccaa 22209746  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 32010040 - 32010096
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||| |  |||| ||||| ||||||||| ||||||| ||||||||||||||    
T  32010040 caaacagtctgaagaaacttatgtgagtagataaactcaaataagtcaatccaaaca 32010096  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 32942685 - 32942745
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||  ||||||| ||||| |||||| ||||||  || ||||||||||||||    
T  32942685 ctcccaaacagtcaaacaaaacttatgtcagtagaaaagctcgtataagtcaatccaaaca 32942745  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 25447220 - 25447164
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||    
T  25447220 caaacagtctcacaaaacttatgtcagtagataaactcaaataagtcaatccaaaca 25447164  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 584137 - 584196
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaac 65  Q
    |||| ||||||||||||| ||| |||| |||||||||||||||||| |||||||||||||    
T  584137 ctccaaaacagtctcacagaacttatgctagtagataagctcaaataagtcaatccaaac 584196  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 43046756 - 43046815
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||||||||||||||| || |||||||| |||||| |||||||| |||||    
T  43046756 ctcccaaacagtctcacaaaacatatg-taatagataagttcaaataagtcaatctaaaca 43046815  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 39980825 - 39980880
Alignment:
Q  11 aaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||||| |||| |||||||||||||||||  || |||||||||||    
T  39980825 aaacagtctcacaaaacttatgctagtagataagctcaaacaagccaatccaaaca 39980880  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 13715548 - 13715506
Alignment:
Q  9 ccaaacagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  13715548 ccaaacagtctcacaaaacatatgctagtagataagatcaaat 13715506  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 18405806 - 18405752
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    |||||||||||||||||| ||||| ||||||||||||||||| |  |||||||||    
T  18405806 caaacagtctcacaaaacttatgtcagtagataagctcaaataaaccaatccaaa 18405752  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 42799946 - 42799885
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagat-aagctcaaattagtcaatccaaaca 66  Q
    |||||||| ||| ||||||||||||||| ||||||| |||||||||| || |||||||||||    
T  42799946 ctcccaaagagtttcacaaaacatatgtcagtagataaagctcaaataagccaatccaaaca 42799885  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 46478769 - 46478818
Alignment:
Q  17 tctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||| || ||||||||||| |||||||| ||||||||||||||    
T  46478769 tctcacaaaacttacgttagtagatatgctcaaataagtcaatccaaaca 46478818  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 20170689 - 20170633
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||| |||| ||||| | ||||||||||||||| || |||||||||||    
T  20170689 caaacagtctcactaaacttatgtcactagataagctcaaataagccaatccaaaca 20170633  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 26990204 - 26990144
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||| | || |||| | ||||| ||||||||||||||||| ||||||||||||||    
T  26990204 ctcccaaacaatatcgcaaagcctatgtcagtagataagctcaaataagtcaatccaaaca 26990144  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 31365167 - 31365111
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatcca 62  Q
    |||||||||||||||||||||| ||||  | ||||||||||||||| || |||||||    
T  31365167 ctcccaaacagtctcacaaaacttatgccaatagataagctcaaataagccaatcca 31365111  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 16073007 - 16072960
Alignment:
Q  19 tcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  16073007 tcacaaaacttatgtcattagataagctcaaataagtcaatccaaaca 16072960  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 21367758 - 21367816
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    ||||||||||||| |||||||| |||| | |||||||| ||||||| || |||||||||    
T  21367758 ctcccaaacagtcccacaaaacttatgctggtagataatctcaaataagccaatccaaa 21367816  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 32095186 - 32095128
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaa 64  Q
    ||||||| | |||||||||||| |||| ||||||||||| | |||||||| ||||||||    
T  32095186 ctcccaagctgtctcacaaaacctatgatagtagataagtttaaattagttaatccaaa 32095128  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 32582831 - 32582888
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||   ||||| |||| |||||||||| ||||||| ||||||||||||||    
T  32582831 ctcccaaacagtct---aaaacttatggtagtagataaactcaaataagtcaatccaaaca 32582888  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 36783331 - 36783281
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtc 56  Q
    |||||||||||||||||||||| ||| ||| ||||||| ||||||| ||||    
T  36783331 ctcccaaacagtctcacaaaacttatattaatagataaactcaaataagtc 36783281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 24684791 - 24684734
Alignment:
Q  16 gtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaacaaccctta 73  Q
    |||||| ||||| ||||  ||||||||||||||||| ||| ||||||||||| |||||    
T  24684791 gtctcaaaaaacttatgccagtagataagctcaaataagttaatccaaacaaacctta 24684734  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 34235056 - 34235011
Alignment:
Q  22 caaaacatatgttagtagataagctcaaattagtcaatccaaacaa 67  Q
    |||||| ||||||||||||||||||| ||| ||||||| |||||||    
T  34235056 caaaacttatgttagtagataagctcgaataagtcaatacaaacaa 34235011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 402521 - 402461
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    ||||||||||||||  |||||| ||||||||| ||||| |||||||  ||||| |||||||    
T  402521 ctcccaaacagtcttgcaaaacttatgttagttgataaactcaaataggtcaacccaaaca 402461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 3845538 - 3845498
Alignment:
Q  10 caaacagtctcacaaaacatatgttagtagataagctcaaa 50  Q
    |||||||||||||||||| ||||  ||||||||||||||||    
T  3845538 caaacagtctcacaaaacttatgccagtagataagctcaaa 3845498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 9832734 - 9832674
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatccaaaca 66  Q
    |||||||||||| | ||||||| ||||| | || |||||||||||| |||||||| |||||    
T  9832734 ctcccaaacagtttgacaaaacttatgtcaataaataagctcaaataagtcaatctaaaca 9832674  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 44124 - 44178
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaattagtcaatc 60  Q
    |||||||||||||||||||||||||||  ||||| || |||||||| || |||||    
T  44124 ctcccaaacagtctcacaaaacatatgccagtaggtacgctcaaataagccaatc 44178  T

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Target: scaffold0057; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 24712 - 24757
Alignment:
Q  6 ctcccaaacagtctcacaaaacatatgttagtagataagctcaaat 51  Q
    |||||||||||||||||||||||||||  | |||||| ||||||||    
T  24712 ctcccaaacagtctcacaaaacatatgccaatagatacgctcaaat 24757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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