View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4282-Insertion-50 (Length: 100)

Name: NF4282-Insertion-50
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4282-Insertion-50
NF4282-Insertion-50
[»] chr5 (6 HSPs)
chr5 (1-80)||(30966634-30966712)
chr5 (20-67)||(30192515-30192562)
chr5 (20-67)||(35671105-35671152)
chr5 (1-67)||(38971596-38971663)
chr5 (1-53)||(30966094-30966146)
chr5 (1-67)||(27532620-27532687)
[»] chr2 (7 HSPs)
chr2 (2-100)||(33662597-33662695)
chr2 (1-64)||(40055380-40055444)
chr2 (20-67)||(29407890-29407937)
chr2 (22-67)||(40156424-40156469)
chr2 (21-52)||(2528693-2528724)
chr2 (1-51)||(31567944-31567995)
chr2 (20-67)||(33222639-33222686)
[»] chr6 (6 HSPs)
chr6 (1-66)||(33052540-33052605)
chr6 (1-63)||(26184613-26184676)
chr6 (1-65)||(31496237-31496302)
chr6 (1-65)||(31501623-31501688)
chr6 (22-77)||(9049077-9049132)
chr6 (1-39)||(17596944-17596983)
[»] chr3 (13 HSPs)
chr3 (1-65)||(51325983-51326048)
chr3 (21-67)||(19341068-19341114)
chr3 (21-67)||(55176351-55176397)
chr3 (21-65)||(6144303-6144347)
chr3 (30-66)||(6525322-6525358)
chr3 (21-65)||(21343499-21343543)
chr3 (21-53)||(42148316-42148348)
chr3 (21-53)||(52514312-52514344)
chr3 (20-67)||(6143694-6143741)
chr3 (20-67)||(10658846-10658893)
chr3 (24-67)||(19341597-19341640)
chr3 (1-80)||(31890232-31890311)
chr3 (20-67)||(32593115-32593162)
[»] chr7 (4 HSPs)
chr7 (21-67)||(38857127-38857173)
chr7 (21-66)||(29097221-29097266)
chr7 (22-74)||(29112398-29112450)
chr7 (18-65)||(26833479-26833526)
[»] chr4 (7 HSPs)
chr4 (20-66)||(11565889-11565935)
chr4 (1-51)||(40334474-40334525)
chr4 (21-67)||(32538328-32538374)
chr4 (22-67)||(18884507-18884552)
chr4 (22-67)||(26791674-26791719)
chr4 (1-53)||(21538506-21538558)
chr4 (21-52)||(53536013-53536044)
[»] chr1 (14 HSPs)
chr1 (21-67)||(7820151-7820197)
chr1 (15-66)||(13147514-13147565)
chr1 (20-67)||(13761047-13761094)
chr1 (18-53)||(28456738-28456773)
chr1 (1-67)||(11828203-11828268)
chr1 (1-65)||(1167565-1167630)
chr1 (22-67)||(26770556-26770601)
chr1 (21-53)||(23442295-23442327)
chr1 (21-65)||(27649277-27649321)
chr1 (21-53)||(28456474-28456506)
chr1 (1-51)||(5845507-5845558)
chr1 (15-74)||(23603511-23603570)
chr1 (1-39)||(45203365-45203404)
chr1 (21-52)||(49875028-49875059)
[»] chr8 (10 HSPs)
chr8 (14-67)||(4174100-4174153)
chr8 (21-55)||(42732795-42732829)
chr8 (30-67)||(36313966-36314003)
chr8 (21-53)||(43519926-43519958)
chr8 (25-53)||(44886817-44886845)
chr8 (22-65)||(7120925-7120968)
chr8 (18-53)||(23512781-23512816)
chr8 (15-50)||(33483512-33483547)
chr8 (30-65)||(39582524-39582559)
chr8 (20-67)||(40740929-40740976)
[»] scaffold0283 (1 HSPs)
scaffold0283 (25-53)||(556-584)
[»] scaffold0092 (1 HSPs)
scaffold0092 (20-67)||(54588-54635)
[»] scaffold0065 (1 HSPs)
scaffold0065 (20-67)||(65341-65388)
[»] scaffold0019 (1 HSPs)
scaffold0019 (18-53)||(134331-134366)


Alignment Details
Target: chr5 (Bit Score: 48; Significance: 5e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 30966712 - 30966634
Alignment:
Q  1 gttaactgtcgaggaaaatagaaccggctgcagttaactatcgagaaaaactttgacagttaactgctaaggaacttaaa 80  Q
    ||||||||||||||||||||||||||||||||| |||||| |||| ||||||| | |||||||||||  |||||||||||    
T  30966712 gttaactgtcgaggaaaatagaaccggctgcagctaacta-cgaggaaaacttcggcagttaactgccgaggaacttaaa 30966634  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 30192515 - 30192562
Alignment:
Q  20 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    |||||||||||||||||||| ||||| ||||||| | |||||||||||    
T  30192515 agaaccggctgcagttaactgtcgaggaaaacttcggcagttaactgc 30192562  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 35671105 - 35671152
Alignment:
Q  20 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||||||  |||| ||||||||| |||||||||||    
T  35671105 agaaccggctgcagttaactgccgaggaaaactttggcagttaactgc 35671152  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 38971596 - 38971663
Alignment:
Q  1 gttaactgtcgaggaaaatagaa-ccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||| ||||||||||| ||| ||||| |||||||||| ||||| ||||||| | |||||||||||    
T  38971596 gttaactatcgaggaaaattgaaaccggcggcagttaactgtcgaggaaaacttcggcagttaactgc 38971663  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30966094 - 30966146
Alignment:
Q  1 gttaactgtcgaggaaaatagaaccggctgcagttaactatcgagaaaaactt 53  Q
    |||||||| ||||||||||| ||||||||| ||||||||  |||| |||||||    
T  30966094 gttaactgccgaggaaaatataaccggctgtagttaactcccgaggaaaactt 30966146  T

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Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27532687 - 27532620
Alignment:
Q  1 gttaactgtcgaggaaaa-tagaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    |||||||| ||||||||| || ||| | |||||||||||||||||| ||||| | | |||||||||||    
T  27532687 gttaactgccgaggaaaaataaaactgactgcagttaactatcgaggaaaacctcggcagttaactgc 27532620  T

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Target: chr2 (Bit Score: 47; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 33662695 - 33662597
Alignment:
Q  2 ttaactgtcgaggaaaatagaaccggctgcagttaactatcgagaaaaactttgacagttaactgctaaggaacttaaaccggacgaatacaaaccatc 100  Q
    ||||||| | |||||||||| ||  ||||  |||||||| |||| | ||||| ||||||||| |||| |||||||||||||||||||||||||||||||    
T  33662695 ttaactgccaaggaaaatagtactagctgacgttaactaccgaggataacttcgacagttaattgctgaggaacttaaaccggacgaatacaaaccatc 33662597  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40055380 - 40055444
Alignment:
Q  1 gttaactgtcgaggaaaa-tagaaccggctgcagttaactatcgagaaaaactttgacagttaac 64  Q
    ||||||| |||||||||| || ||||||||||||||||||| |||| ||||| ||| ||||||||    
T  40055380 gttaactatcgaggaaaactaaaaccggctgcagttaactaccgaggaaaaccttggcagttaac 40055444  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 29407937 - 29407890
Alignment:
Q  20 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||||||| |||| ||||||| | |||||||||||    
T  29407937 agaaccggctgcagttaactaacgaggaaaacttcggcagttaactgc 29407890  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 40156424 - 40156469
Alignment:
Q  22 aaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||||  |||| ||||||| |||||||||||||    
T  40156424 aaccggctgcagttaactgacgaggaaaacttcgacagttaactgc 40156469  T

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Target: chr2; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 2528693 - 2528724
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaact 52  Q
    ||||||||||||||||||||||||| ||||||    
T  2528693 gaaccggctgcagttaactatcgaggaaaact 2528724  T

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Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31567944 - 31567995
Alignment:
Q  1 gttaactgtcgaggaaaa-tagaaccggctgcagttaactatcgagaaaaac 51  Q
    ||||||||||||| |||| || | ||| ||||||||||||||||||||||||    
T  31567944 gttaactgtcgagaaaaaataaatccgactgcagttaactatcgagaaaaac 31567995  T

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Target: chr2; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 33222639 - 33222686
Alignment:
Q  20 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||||||  |||| ||||||| | |||||||||||    
T  33222639 agaaccggctgcagttaactgccgaggaaaacttcggcagttaactgc 33222686  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33052540 - 33052605
Alignment:
Q  1 gttaactgtcgaggaaaatagaaccggctgcagttaactatcgagaaaaactttgacagttaactg 66  Q
    |||||||||||||||||||| ||||| ||||||||||||| |||||||||  | ||||||||||||    
T  33052540 gttaactgtcgaggaaaataaaaccgtctgcagttaactaccgagaaaaatctcgacagttaactg 33052605  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26184676 - 26184613
Alignment:
Q  1 gttaactgtcgaggaaaa-tagaaccggctgcagttaactatcgagaaaaactttgacagttaa 63  Q
    |||||||||||||||||| || ||||||||||||||||||| |||  ||||| | |||||||||    
T  26184676 gttaactgtcgaggaaaaataaaaccggctgcagttaactaccgatgaaaacatcgacagttaa 26184613  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31496237 - 31496302
Alignment:
Q  1 gttaactgtcgaggaaaa-tagaaccggctgcagttaactatcgagaaaaactttgacagttaact 65  Q
    |||||||||||||||||| || ||||||||||||||| ||| |||| ||||| | | |||||||||    
T  31496237 gttaactgtcgaggaaaaataaaaccggctgcagttatctaccgaggaaaacctcggcagttaact 31496302  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31501623 - 31501688
Alignment:
Q  1 gttaactgtcgaggaaaat-agaaccggctgcagttaactatcgagaaaaactttgacagttaact 65  Q
    ||||||||||||||||||| | ||||||||||||||| ||| |||| ||||| | | |||||||||    
T  31501623 gttaactgtcgaggaaaattaaaaccggctgcagttatctaccgaggaaaacctcggcagttaact 31501688  T

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Target: chr6; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 9049132 - 9049077
Alignment:
Q  22 aaccggctgcagttaactatcgagaaaaactttgacagttaactgctaaggaactt 77  Q
    ||||||||||||||||||| |||| ||||||| |  ||||||||||  ||||||||    
T  9049132 aaccggctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaactt 9049077  T

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Target: chr6; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 17596944 - 17596983
Alignment:
Q  1 gttaactgtcgaggaaaa-tagaaccggctgcagttaact 39  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  17596944 gttaactgtcgaggaaaaataaaaccggctgcagttaact 17596983  T

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Target: chr3 (Bit Score: 38; Significance: 0.0000000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 51325983 - 51326048
Alignment:
Q  1 gttaactgtcgaggaaaa-tagaaccggctgcagttaactatcgagaaaaactttgacagttaact 65  Q
    |||||||||||||||||| || ||||||||||||||||||| | |||||||| | |||||||||||    
T  51325983 gttaactgtcgaggaaaaataaaaccggctgcagttaactaccaagaaaaacctcgacagttaact 51326048  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 19341068 - 19341114
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||    
T  19341068 gaaccggctgcagttaactaccgaggaaaacttcgacagttaactgc 19341114  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 55176397 - 55176351
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||| ||||||||||||||||| ||||||| | |||||||||||    
T  55176397 gaaccggatgcagttaactatcgaggaaaacttcggcagttaactgc 55176351  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 6144347 - 6144303
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactttgacagttaact 65  Q
    |||||||||||||||||||| |||| ||||||| | |||||||||    
T  6144347 gaaccggctgcagttaactaccgaggaaaacttcggcagttaact 6144303  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 6525358 - 6525322
Alignment:
Q  30 gcagttaactatcgagaaaaactttgacagttaactg 66  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  6525358 gcagctaactatcgagaaaaactttggcagttaactg 6525322  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 21343543 - 21343499
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactttgacagttaact 65  Q
    |||||||||||||||||||| |||| ||||||| | |||||||||    
T  21343543 gaaccggctgcagttaactaccgaggaaaacttcggcagttaact 21343499  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 42148316 - 42148348
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactt 53  Q
    ||||||||||||||||||||||||| |||||||    
T  42148316 gaaccggctgcagttaactatcgaggaaaactt 42148348  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 52514312 - 52514344
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactt 53  Q
    ||||||||||||||||||||||||| |||||||    
T  52514312 gaaccggctgcagttaactatcgaggaaaactt 52514344  T

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Target: chr3; HSP #9
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 6143694 - 6143741
Alignment:
Q  20 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||||||  |||| ||||||| | |||||||||||    
T  6143694 agaaccggctgcagttaactgccgaggaaaacttcggcagttaactgc 6143741  T

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Target: chr3; HSP #10
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 10658846 - 10658893
Alignment:
Q  20 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    |||||||||||||| |||||  |||| ||||||||| |||||||||||    
T  10658846 agaaccggctgcagctaactgccgaggaaaactttggcagttaactgc 10658893  T

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Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 19341640 - 19341597
Alignment:
Q  24 ccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||| |||| ||||||| | |||||||||||    
T  19341640 ccggctgcagttaactaccgaggaaaacttcggcagttaactgc 19341597  T

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Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 31890311 - 31890232
Alignment:
Q  1 gttaactgtcgaggaaaatagaaccggctgcagttaactatcgagaaaaactttgacagttaactgctaaggaacttaaa 80  Q
    |||||||| ||| ||||| |||||||||||||||||  ||  ||| ||||||| | |||||||||||  | |||||||||    
T  31890311 gttaactgccgatgaaaaaagaaccggctgcagttagttacagaggaaaacttcggcagttaactgccgatgaacttaaa 31890232  T

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Target: chr3; HSP #13
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 32593162 - 32593115
Alignment:
Q  20 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||||||  |||| ||||||| || ||||||||||    
T  32593162 agaaccggctgcagttaacttccgaggaaaacttcgatagttaactgc 32593115  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 38857127 - 38857173
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    |||||||||||| |||||||||||||||||||| | |||||||||||    
T  38857127 gaaccggctgcatttaactatcgagaaaaacttcggcagttaactgc 38857173  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 29097221 - 29097266
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactttgacagttaactg 66  Q
    |||||||||||||||||||| |||| ||||||| |||| |||||||    
T  29097221 gaaccggctgcagttaactaccgaggaaaacttcgacaattaactg 29097266  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 29112398 - 29112450
Alignment:
Q  22 aaccggctgcagttaactatcgagaaaaactttgacagttaactgctaaggaa 74  Q
    ||||||||||||||||||  |||| ||||||| | |||||||||||| |||||    
T  29112398 aaccggctgcagttaactgccgaggaaaacttcggcagttaactgctgaggaa 29112450  T

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Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 26833526 - 26833479
Alignment:
Q  18 atagaaccggctgcagttaactatcgagaaaaactttgacagttaact 65  Q
    ||||||||||||||||||||||| |||  ||||||||| |||| ||||    
T  26833526 atagaaccggctgcagttaactaccgaagaaaactttggcagtaaact 26833479  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 11565889 - 11565935
Alignment:
Q  20 agaaccggctgcagttaactatcgagaaaaactttgacagttaactg 66  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  11565889 agaaccggctgcagttaactgtcgaggaaaacttcgacagttaactg 11565935  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40334474 - 40334525
Alignment:
Q  1 gttaactgtcgaggaaaa-tagaaccggctgcagttaactatcgagaaaaac 51  Q
    |||||||||||||||||| || ||||||||||||||||||| ||| ||||||    
T  40334474 gttaactgtcgaggaaaaataaaaccggctgcagttaactaccgaaaaaaac 40334525  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 32538374 - 32538328
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    |||||||||||||||||||||||| |||||||| | |||| ||||||    
T  32538374 gaaccggctgcagttaactatcgaaaaaaacttcggcagtaaactgc 32538328  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 18884552 - 18884507
Alignment:
Q  22 aaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||||  |||||||||||| | |||||||||||    
T  18884552 aaccggctgcagttaactgccgagaaaaacttcggcagttaactgc 18884507  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 26791674 - 26791719
Alignment:
Q  22 aaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||||| |||||||||| | | |||||||||||    
T  26791674 aaccggctgcagttaactaccgagaaaaacctcggcagttaactgc 26791719  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21538558 - 21538506
Alignment:
Q  1 gttaactgtcgaggaaaatagaaccggctgcagttaactatcgagaaaaactt 53  Q
    ||||||| |||||||||||| ||||| |||||||||||||  ||| |||||||    
T  21538558 gttaactatcgaggaaaatataaccgactgcagttaactactgaggaaaactt 21538506  T

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Target: chr4; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 53536013 - 53536044
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaact 52  Q
    ||||||||||||||||||||||||| ||||||    
T  53536013 gaaccggctgcagttaactatcgaggaaaact 53536044  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 7820151 - 7820197
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||    
T  7820151 gaaccggctgcagttaactatcgaaaaaaacttcggcagttaactgc 7820197  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 13147514 - 13147565
Alignment:
Q  15 aaaatagaaccggctgcagttaactatcgagaaaaactttgacagttaactg 66  Q
    |||||||||||| ||||||||||||| |||| ||||| | ||||||||||||    
T  13147514 aaaatagaaccgactgcagttaactaccgaggaaaacctcgacagttaactg 13147565  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 13761094 - 13761047
Alignment:
Q  20 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||||||  |||| ||||||| |||||||||||||    
T  13761094 agaaccggctgcagttaactgccgaggaaaacttcgacagttaactgc 13761047  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 28456773 - 28456738
Alignment:
Q  18 atagaaccggctgcagttaactatcgagaaaaactt 53  Q
    |||||||||||||||||||||||||||| |||||||    
T  28456773 atagaaccggctgcagttaactatcgaggaaaactt 28456738  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 11828268 - 11828203
Alignment:
Q  1 gttaactgtcgaggaaaatagaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    |||||||| |||| ||||||||||||  || ||||||||| |||||||||||| | |||||||||||    
T  11828268 gttaactgccgagaaaaatagaaccga-tgtagttaactaccgagaaaaacttcggcagttaactgc 11828203  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1167565 - 1167630
Alignment:
Q  1 gttaactgtcgaggaaaa-tagaaccggctgcagttaactatcgagaaaaactttgacagttaact 65  Q
    |||||||| ||||||||| || ||||| |||||||||||||||||| ||||| | | |||||||||    
T  1167565 gttaactgccgaggaaaagtaaaaccgactgcagttaactatcgaggaaaacctcggcagttaact 1167630  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 26770601 - 26770556
Alignment:
Q  22 aaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||    
T  26770601 aaccggctgcagttaactaccgaggaaaattttggcagttaactgc 26770556  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 23442295 - 23442327
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactt 53  Q
    ||||||||||||||||||||||||| |||||||    
T  23442295 gaaccggctgcagttaactatcgaggaaaactt 23442327  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 27649277 - 27649321
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactttgacagttaact 65  Q
    |||||||||||||||||||| |||| ||||||| |||||| ||||    
T  27649277 gaaccggctgcagttaactaccgaggaaaacttcgacagtaaact 27649321  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 28456474 - 28456506
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactt 53  Q
    ||||||||||||||||||||||||| |||||||    
T  28456474 gaaccggctgcagttaactatcgaggaaaactt 28456506  T

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Target: chr1; HSP #11
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5845558 - 5845507
Alignment:
Q  1 gttaactgtcgaggaaaa-tagaaccggctgcagttaactatcgagaaaaac 51  Q
    |||||||| ||||||||| || ||||||||||||||||||| |||| |||||    
T  5845558 gttaactgccgaggaaaaataaaaccggctgcagttaactaccgaggaaaac 5845507  T

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Target: chr1; HSP #12
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 23603511 - 23603570
Alignment:
Q  15 aaaatagaaccggctgcagttaactatcgagaaaaactttgacagttaactgctaaggaa 74  Q
    |||||| ||| | |||||||||||||||||| ||||| ||| ||||||||| || |||||    
T  23603511 aaaataaaacagactgcagttaactatcgaggaaaaccttggcagttaactactgaggaa 23603570  T

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Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 45203365 - 45203404
Alignment:
Q  1 gttaactgtcgaggaaaa-tagaaccggctgcagttaact 39  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  45203365 gttaagtgtcgaggaaaaatagaaccggctgcagttaact 45203404  T

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Target: chr1; HSP #14
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 49875028 - 49875059
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaact 52  Q
    ||||||||||||||||||||||||| ||||||    
T  49875028 gaaccggctgcagttaactatcgaggaaaact 49875059  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 4174100 - 4174153
Alignment:
Q  14 gaaaatagaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    |||||| ||||||||||||||||| || ||| |||||||| |||||||||||||    
T  4174100 gaaaatcgaaccggctgcagttaattaccgaaaaaaacttcgacagttaactgc 4174153  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 42732829 - 42732795
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactttg 55  Q
    ||||||||||||||||||||||||| |||||||||    
T  42732829 gaaccggctgcagttaactatcgaggaaaactttg 42732795  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 36313966 - 36314003
Alignment:
Q  30 gcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  36313966 gcagttaactaccgagaaaaactttggcagttaactgc 36314003  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 43519926 - 43519958
Alignment:
Q  21 gaaccggctgcagttaactatcgagaaaaactt 53  Q
    ||||||||||||||||||||||||| |||||||    
T  43519926 gaaccggctgcagttaactatcgaggaaaactt 43519958  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 44886845 - 44886817
Alignment:
Q  25 cggctgcagttaactatcgagaaaaactt 53  Q
    |||||||||||||||||||||||||||||    
T  44886845 cggctgcagttaactatcgagaaaaactt 44886817  T

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Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 7120925 - 7120968
Alignment:
Q  22 aaccggctgcagttaactatcgagaaaaactttgacagttaact 65  Q
    ||||||||||||||| ||  |||||||||||||| |||||||||    
T  7120925 aaccggctgcagttagctgccgagaaaaactttggcagttaact 7120968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 23512816 - 23512781
Alignment:
Q  18 atagaaccggctgcagttaactatcgagaaaaactt 53  Q
    ||||||||||||| ||||||||| ||||||||||||    
T  23512816 atagaaccggctgtagttaactaccgagaaaaactt 23512781  T

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Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 33483547 - 33483512
Alignment:
Q  15 aaaatagaaccggctgcagttaactatcgagaaaaa 50  Q
    |||||| |||||||||||||||||||||||| ||||    
T  33483547 aaaataaaaccggctgcagttaactatcgaggaaaa 33483512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 39582524 - 39582559
Alignment:
Q  30 gcagttaactatcgagaaaaactttgacagttaact 65  Q
    |||||||||||||||||||||||| | |||||||||    
T  39582524 gcagttaactatcgagaaaaacttcggcagttaact 39582559  T

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Target: chr8; HSP #10
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 40740929 - 40740976
Alignment:
Q  20 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||||||  |||| ||||||| | |||||||||||    
T  40740929 agaaccggctgcagttaactgccgaggaaaacttcggcagttaactgc 40740976  T

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Target: scaffold0283 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 556 - 584
Alignment:
Q  25 cggctgcagttaactatcgagaaaaactt 53  Q
    |||||||||||||||||||||||||||||    
T  556 cggctgcagttaactatcgagaaaaactt 584  T

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Target: scaffold0092 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 54588 - 54635
Alignment:
Q  20 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    ||||||||||||||||||||  |||| ||||| | |||||||||||||    
T  54588 agaaccggctgcagttaactgccgaggaaaacatcgacagttaactgc 54635  T

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Target: scaffold0065 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 65341 - 65388
Alignment:
Q  20 agaaccggctgcagttaactatcgagaaaaactttgacagttaactgc 67  Q
    |||| ||||||||||||||| ||||| ||||||| | |||||||||||    
T  65341 agaatcggctgcagttaactgtcgaggaaaacttcggcagttaactgc 65388  T

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Target: scaffold0019 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 134366 - 134331
Alignment:
Q  18 atagaaccggctgcagttaactatcgagaaaaactt 53  Q
    ||||||||||||||||||||||| |||| |||||||    
T  134366 atagaaccggctgcagttaactaccgaggaaaactt 134331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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