View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4282_high_10 (Length: 321)

Name: NF4282_high_10
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4282_high_10
NF4282_high_10
[»] chr3 (2 HSPs)
chr3 (1-311)||(38213980-38214290)
chr3 (1-311)||(38218199-38218509)
[»] chr8 (3 HSPs)
chr8 (77-311)||(42991291-42991523)
chr8 (77-270)||(35017979-35018172)
chr8 (172-213)||(33811108-33811149)
[»] chr7 (4 HSPs)
chr7 (125-254)||(37188902-37189031)
chr7 (182-243)||(32715057-32715118)
chr7 (182-243)||(32709835-32709896)
chr7 (182-243)||(32718435-32718496)
[»] chr6 (2 HSPs)
chr6 (182-246)||(10411404-10411468)
chr6 (182-246)||(10379762-10379826)
[»] chr4 (6 HSPs)
chr4 (124-240)||(53492975-53493091)
chr4 (125-240)||(53499268-53499383)
chr4 (141-214)||(53495378-53495451)
chr4 (146-232)||(53488672-53488758)
chr4 (143-213)||(53502408-53502478)
chr4 (125-240)||(52591013-52591128)
[»] chr2 (2 HSPs)
chr2 (146-237)||(16942656-16942747)
chr2 (146-237)||(17013321-17013412)
[»] chr1 (1 HSPs)
chr1 (172-213)||(47495928-47495969)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 38214290 - 38213980
Alignment:
Q  1 tatttaagttcgtgtttgtataaagaactcaattatgtgtgtataacaaacactctaacaagttcatgtaactaaatgcagatttttggttgacaacacc 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  38214290 tatttaagttcgtgtttgtataaagaactcaattatgtgcttataacaaacacgctaacaagttcatgtaactaattgcagatttttggttgacaacacc 38214191  T
Q  101 ccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214190 ccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattggg 38214091  T
Q  201 ctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctactgagttatcttctgtctcttccac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214090 ctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctactgagttatcttctgtctcttccac 38213991  T
Q  301 ttccttctctg 311  Q
    |||||||||||    
T  38213990 ttccttctctg 38213980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 38218509 - 38218199
Alignment:
Q  1 tatttaagttcgtgtttgtataaagaactcaattatgtgtgtataacaaacactctaacaagttcatgtaactaaatgcagatttttggttgacaacacc 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  38218509 tatttaagttcgtgtttgtataaagaactcaattatgtgcttataacaaacacgctaacaagttcatgtaactaattgcagatttttggttgacaacacc 38218410  T
Q  101 ccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218409 ccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattggg 38218310  T
Q  201 ctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctactgagttatcttctgtctcttccac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218309 ctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctactgagttatcttctgtctcttccac 38218210  T
Q  301 ttccttctctg 311  Q
    |||||||||||    
T  38218209 ttccttctctg 38218199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 77 - 311
Target Start/End: Original strand, 42991291 - 42991523
Alignment:
Q  77 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 176  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||| |||||||    
T  42991291 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatctattagtattcctttcccaaagaaccaaccgatgagaatatattcaa 42991390  T
Q  177 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctac 276  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42991391 gtctttggaacgctgaagattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac 42991490  T
Q  277 tgagttatcttctgtctcttccacttccttctctg 311  Q
    ||| |||||  ||||||||||||||||||||||||    
T  42991491 tgaattatc--ctgtctcttccacttccttctctg 42991523  T

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Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 77 - 270
Target Start/End: Original strand, 35017979 - 35018172
Alignment:
Q  77 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 176  Q
    |||||||| |||||||| ||||  ||||||||| | |||||||||| |||||| |||||| |||| || ||||||||||||||||||||||||||||| |    
T  35017979 tgcagattcttggttgataacatgccaataagggtattcaagaatgttgaatctattggtgttccttttccaaagaaccaaccaatgagaatctattcca 35018078  T
Q  177 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaa 270  Q
    | || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  35018079 gcctgtggaatgctgatgattgggccacaagaggtggattggtgaaaactgattggtccaaagcaccctttacagcatactaccgtaatttcaa 35018172  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 33811149 - 33811108
Alignment:
Q  172 ttcaagtctctggaatgctgatgattgggctacaagaggtgg 213  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  33811149 ttcaagtgtatggaatgcagatgattgggctacaagaggtgg 33811108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 125 - 254
Target Start/End: Original strand, 37188902 - 37189031
Alignment:
Q  125 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 224  Q
    ||||||| |||| |||||||||| || | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||  | || || |    
T  37188902 gaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggctacaagaggtggacttgttaaga 37189001  T
Q  225 ctgattggtccaaagcaccctttacagctt 254  Q
    | ||||||||||| || || ||||| ||||    
T  37189002 cagattggtccaatgctccttttactgctt 37189031  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 32715057 - 32715118
Alignment:
Q  182 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 243  Q
    |||||||| ||||||||||| |||||||||||||||| |||||| |||||||| ||||||||    
T  32715057 tggaatgcagatgattgggccacaagaggtggtttggagaaaacagattggtcaaaagcacc 32715118  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 32709835 - 32709896
Alignment:
Q  182 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 243  Q
    |||||||| ||||||||||| ||||||||||| || | |||||| |||||||||||||||||    
T  32709835 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcacc 32709896  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 32718435 - 32718496
Alignment:
Q  182 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 243  Q
    |||||||| ||||||||||| ||||| ||||| || |  |||||||||||||| ||||||||    
T  32718435 tggaatgcagatgattgggccacaaggggtggattagaaaaaactgattggtcaaaagcacc 32718496  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 10411404 - 10411468
Alignment:
Q  182 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctt 246  Q
    |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  10411404 tggaatgctgatgattgggctacaaggggtggtttggagaaaacagattggtccaaagcaccctt 10411468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 10379826 - 10379762
Alignment:
Q  182 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctt 246  Q
    |||||||||||||||||||| ||||| |||||||| | |||||| ||||||||||||||||||||    
T  10379826 tggaatgctgatgattgggccacaaggggtggtttagagaaaacagattggtccaaagcaccctt 10379762  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 53492975 - 53493091
Alignment:
Q  124 tgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaa 223  Q
    |||||||| |||  |||||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||  | || ||     
T  53492975 tgaatcaagtggcgttccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaag 53493074  T
Q  224 actgattggtccaaagc 240  Q
    || ||||||||||||||    
T  53493075 acagattggtccaaagc 53493091  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 53499268 - 53499383
Alignment:
Q  125 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 224  Q
    ||||||| |||| | |||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||  | || || |    
T  53499268 gaatcaaatggtgtaccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaaga 53499367  T
Q  225 ctgattggtccaaagc 240  Q
    | ||||||||||||||    
T  53499368 cagattggtccaaagc 53499383  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 53495378 - 53495451
Alignment:
Q  141 cattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggt 214  Q
    |||| |||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||    
T  53495378 catttccaaagaatcaaccaatgaggatatattcaagtctatggaatgctgatgattgggcaacaagaggtggt 53495451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 53488758 - 53488672
Alignment:
Q  146 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattgg 232  Q
    |||||||| || ||||||||| | ||||||||||| |||||||| ||||||||||| |||||||||||| | |||||||| ||||||    
T  53488758 ccaaagaagcagccaatgagattatattcaagtctatggaatgccgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 53488672  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 53502408 - 53502478
Alignment:
Q  143 ttcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtgg 213  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||| ||| | ||||| |||||||||||    
T  53502408 ttcccaaagaaccaaccaatgagaatatattcaagtttgtggaatgcagataactgggcaacaagaggtgg 53502478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 52591013 - 52591128
Alignment:
Q  125 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 224  Q
    |||||||  |||||||| || || || | |||| ||||||| || ||||||||||| ||| |||| ||| ||||||| ||||| || ||| | | |||||    
T  52591013 gaatcaaaaggtattccttttcctaaaagccaagcaatgagtatatattcaagtctttgggatgcagataattgggccacaaggggaggtctagcgaaaa 52591112  T
Q  225 ctgattggtccaaagc 240  Q
    ||||||||||| ||||    
T  52591113 ctgattggtcccaagc 52591128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 16942656 - 16942747
Alignment:
Q  146 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 237  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  16942656 ccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 16942747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 17013321 - 17013412
Alignment:
Q  146 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 237  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  17013321 ccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 17013412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 47495928 - 47495969
Alignment:
Q  172 ttcaagtctctggaatgctgatgattgggctacaagaggtgg 213  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  47495928 ttcaagtgtatggaatgcagatgattgggctacaagaggtgg 47495969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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