View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282_high_12 (Length: 307)
Name: NF4282_high_12
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 38214650 - 38214366
Alignment:
| Q |
1 |
catatcatatattctttctattccaaaagcaactttaattaaaatagcttctacacgatatcaaaagcttttatgagaatatttttgttctgtttctgtt |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214650 |
catatcatatattctttctattccgaaagcaactttaattaaaatagcttcaacacgatatcaaaagcttttatgagaatatttttgttctgtttctgtt |
38214551 |
T |
|
| Q |
101 |
ttgcttcttgtgtattgtggtgctgcaagtaaataacgatgctatatgcatatatggtgcagttgtcatcacagggaccgactcatgatgaaattgattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214550 |
ttgcttcttgtgtattgtggtgctgcaagtaaataacgatg--------atatatggtgcagttgtcatcacagggaccgactcatgatgaaattgattt |
38214459 |
T |
|
| Q |
201 |
tgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacct |
293 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214458 |
tgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacct |
38214366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 38218871 - 38218585
Alignment:
| Q |
1 |
catatcatatattctttctattccaaaagcaactttaattaaaatagcttctacacgatatcaaaagcttttat--gagaatatttttgttctgtttctg |
98 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38218871 |
catatcatatattctttctattccaaaagcaactttaattaaaatagcttcaacacgatatcaaaagcttttatatgagaatatttttgttctgtttctg |
38218772 |
T |
|
| Q |
99 |
ttttgcttcttgtgtattgtggtgctgcaagtaaataacgatgctatatgcatatatggtgcagttgtcatcacagggaccgactcatgatgaaattgat |
198 |
Q |
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| T |
38218771 |
ttttgcttcttgtgtattgtggtgctgcaagtaaataacgatg--------atatatggtgcagttgtcatcacagggaccgactcatgatgaaattgat |
38218680 |
T |
|
| Q |
199 |
tttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacct |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218679 |
tttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacct |
38218585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 153 - 293
Target Start/End: Original strand, 42991023 - 42991163
Alignment:
| Q |
153 |
tatggtgcagttgtcatcacagggaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtg |
252 |
Q |
| |
|
||||||||||||||||||||| || || ||||| || |||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||| |
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| T |
42991023 |
tatggtgcagttgtcatcacaagggccaactcacgacgaaattgattttgagttcttgggaaatgttagcggtaatccttacattctccacacaaacgtg |
42991122 |
T |
|
| Q |
253 |
ttttctcaaggcaaaggaaacagagaacaacaattctacct |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42991123 |
ttttctcaaggcaaaggaaacagagaacaacaattctacct |
42991163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 296
Target Start/End: Original strand, 35017692 - 35017833
Alignment:
| Q |
155 |
tggtgcagttgtcatcacagggaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgtt |
254 |
Q |
| |
|
|||| ||| ||||||| || ||||| || |||||||| ||||||||||||||||| ||||| ||||| || || || ||||| ||||||||| | || |
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| T |
35017692 |
tggtacagctgtcatcccaaggaccaacccatgatgagattgattttgagttcttgggaaacacaagtggtgacccttatattcttcacacaaacatctt |
35017791 |
T |
|
| Q |
255 |
ttctcaaggcaaaggaaacagagaacaacaattctacctatg |
296 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||| |
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|
| T |
35017792 |
cactcaaggtaaaggtaatagagaacaacaattctacctatg |
35017833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 288
Target Start/End: Original strand, 53494981 - 53495082
Alignment:
| Q |
187 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
286 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||| ||||| || || |||| ||| ||||| || ||||||| |||||| |||||||| ||||||||||||| |
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| T |
53494981 |
gatgagattgactttgaattcttagggaatgtgagtggagaaccatacactcttcacaccaatgtgttttgtcaaggaaaaggaaatagagaacaacaat |
53495080 |
T |
|
| Q |
287 |
tc |
288 |
Q |
| |
|
|| |
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|
| T |
53495081 |
tc |
53495082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 53498939 - 53499045
Alignment:
| Q |
187 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
286 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||| | ||||| ||||| ||||| || ||||| || |||||| ||||||||||| |||||||| ||||||| |
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|
| T |
53498939 |
gatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgtttagccaaggcaaaggtaacagagagcaacaat |
53499038 |
T |
|
| Q |
287 |
tctacct |
293 |
Q |
| |
|
| ||||| |
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|
| T |
53499039 |
tttacct |
53499045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 53502099 - 53502186
Alignment:
| Q |
209 |
taggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctatg |
296 |
Q |
| |
|
|||||||||| ||||| || || ||||| || ||||| || || || |||||||||||||||||| |||||||||||||| ||||| |
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| T |
53502099 |
taggaaatgtaagtggtgaaccatacatccttcacactaatgttttcagtcaaggcaaaggaaacagggaacaacaattctatctatg |
53502186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 37188574 - 37188683
Alignment:
| Q |
187 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
286 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| | ||||| || || |||||||| ||||| || |||||| ||||| ||||| |||||||| ||||||| |
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|
| T |
37188574 |
gatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaat |
37188673 |
T |
|
| Q |
287 |
tctacctatg |
296 |
Q |
| |
|
|||||||||| |
|
|
| T |
37188674 |
tctacctatg |
37188683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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