View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4282_high_15 (Length: 253)

Name: NF4282_high_15
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4282_high_15
NF4282_high_15
[»] chr5 (19 HSPs)
chr5 (10-238)||(28562648-28562876)
chr5 (10-238)||(28566216-28566444)
chr5 (76-238)||(26547761-26547923)
chr5 (76-238)||(26551320-26551482)
chr5 (96-238)||(4732120-4732262)
chr5 (96-238)||(25185074-25185216)
chr5 (96-238)||(19689239-19689382)
chr5 (96-238)||(19685856-19685999)
chr5 (110-237)||(34653045-34653171)
chr5 (76-237)||(2453008-2453161)
chr5 (97-234)||(26726638-26726772)
chr5 (166-238)||(17944409-17944480)
chr5 (170-238)||(33920904-33920971)
chr5 (170-237)||(1810698-1810765)
chr5 (34-91)||(42062568-42062624)
chr5 (96-135)||(3194888-3194927)
chr5 (170-239)||(26337745-26337813)
chr5 (197-238)||(40800205-40800246)
chr5 (170-238)||(9690525-9690592)
[»] chr3 (29 HSPs)
chr3 (10-238)||(2783723-2783951)
chr3 (76-238)||(30158320-30158487)
chr3 (96-238)||(10963096-10963237)
chr3 (96-238)||(10966605-10966746)
chr3 (96-238)||(10959589-10959730)
chr3 (76-205)||(25888734-25888860)
chr3 (76-237)||(9157660-9157817)
chr3 (96-238)||(18882902-18883043)
chr3 (103-238)||(44508504-44508638)
chr3 (97-238)||(29233874-29234013)
chr3 (97-238)||(5887270-5887409)
chr3 (97-238)||(5897254-5897393)
chr3 (97-238)||(6173640-6173778)
chr3 (97-238)||(23375016-23375155)
chr3 (76-238)||(42354700-42354856)
chr3 (76-237)||(9154487-9154644)
chr3 (97-238)||(16415042-16415180)
chr3 (97-238)||(18516016-18516154)
chr3 (97-238)||(16314876-16315014)
chr3 (97-238)||(18495870-18496008)
chr3 (106-237)||(20536866-20536994)
chr3 (97-234)||(2279911-2280045)
chr3 (170-238)||(19868744-19868812)
chr3 (170-237)||(4250148-4250214)
chr3 (34-92)||(35412247-35412304)
chr3 (34-91)||(18645111-18645167)
chr3 (170-238)||(3305612-3305679)
chr3 (170-238)||(28327206-28327273)
chr3 (170-238)||(28330531-28330598)
[»] chr2 (14 HSPs)
chr2 (10-238)||(13517906-13518134)
chr2 (10-238)||(11059398-11059629)
chr2 (96-238)||(18011638-18011780)
chr2 (103-237)||(15719514-15719645)
chr2 (96-238)||(1503722-1503861)
chr2 (96-238)||(1506926-1507065)
chr2 (103-237)||(15704260-15704391)
chr2 (96-238)||(29435442-29435580)
chr2 (76-238)||(38326040-38326199)
chr2 (76-238)||(38326560-38326719)
chr2 (97-238)||(18938586-18938725)
chr2 (97-238)||(22592206-22592344)
chr2 (146-237)||(4577594-4577681)
chr2 (170-238)||(40678061-40678128)
[»] chr1 (12 HSPs)
chr1 (76-238)||(37641535-37641697)
chr1 (103-238)||(28918069-28918204)
chr1 (96-238)||(17903076-17903216)
chr1 (96-238)||(49716062-49716200)
chr1 (96-238)||(49719545-49719683)
chr1 (97-238)||(16839221-16839360)
chr1 (97-238)||(16849151-16849290)
chr1 (97-234)||(20964148-20964282)
chr1 (97-238)||(24200532-24200670)
chr1 (97-237)||(20981051-20981188)
chr1 (170-238)||(23441573-23441640)
chr1 (170-238)||(33898088-33898155)
[»] chr6 (22 HSPs)
chr6 (76-238)||(14969337-14969497)
chr6 (96-237)||(17231546-17231684)
chr6 (96-238)||(11410456-11410594)
chr6 (97-238)||(22920220-22920359)
chr6 (96-237)||(17696277-17696417)
chr6 (118-238)||(34502053-34502172)
chr6 (110-237)||(13095988-13096112)
chr6 (96-238)||(2330318-2330459)
chr6 (117-237)||(3827106-3827225)
chr6 (96-238)||(7560464-7560605)
chr6 (23-123)||(20189837-20189935)
chr6 (23-123)||(22146056-22146154)
chr6 (23-123)||(16730989-16731087)
chr6 (96-238)||(31123118-31123259)
chr6 (146-233)||(31262509-31262595)
chr6 (96-170)||(2330981-2331055)
chr6 (166-238)||(9314074-9314145)
chr6 (170-238)||(12746568-12746635)
chr6 (166-237)||(22464173-22464243)
chr6 (170-237)||(33679478-33679544)
chr6 (166-238)||(28117598-28117669)
chr6 (178-238)||(5618597-5618656)
[»] chr8 (17 HSPs)
chr8 (76-238)||(5963924-5964086)
chr8 (96-238)||(22653950-22654092)
chr8 (96-238)||(27863843-27863985)
chr8 (103-237)||(14187696-14187830)
chr8 (96-237)||(20262246-20262384)
chr8 (96-237)||(21048876-21049014)
chr8 (103-237)||(18696216-18696347)
chr8 (107-237)||(30645173-30645302)
chr8 (97-238)||(24434723-24434862)
chr8 (97-238)||(24444769-24444908)
chr8 (97-238)||(17543742-17543880)
chr8 (97-238)||(17013321-17013459)
chr8 (97-238)||(24903773-24903910)
chr8 (159-204)||(452896-452941)
chr8 (96-171)||(31981048-31981123)
chr8 (170-238)||(5827789-5827856)
chr8 (104-141)||(31984691-31984728)
[»] chr7 (20 HSPs)
chr7 (76-238)||(11825644-11825806)
chr7 (81-234)||(5827001-5827153)
chr7 (96-238)||(20100332-20100473)
chr7 (76-238)||(22256929-22257087)
chr7 (97-238)||(748330-748471)
chr7 (76-238)||(22232916-22233080)
chr7 (76-238)||(22253659-22253823)
chr7 (97-238)||(2349164-2349302)
chr7 (76-238)||(8397526-8397674)
chr7 (119-238)||(26182014-26182132)
chr7 (32-110)||(26809153-26809231)
chr7 (97-238)||(26460157-26460296)
chr7 (97-238)||(710306-710444)
chr7 (97-238)||(2251563-2251701)
chr7 (97-234)||(23599055-23599189)
chr7 (75-170)||(23467442-23467534)
chr7 (113-199)||(42606060-42606142)
chr7 (170-238)||(3541457-3541524)
chr7 (170-237)||(22083732-22083798)
chr7 (170-238)||(38431155-38431222)
[»] chr4 (17 HSPs)
chr4 (76-238)||(18859446-18859608)
chr4 (100-238)||(17670096-17670247)
chr4 (96-238)||(11702876-11703015)
chr4 (97-238)||(49636811-49636950)
chr4 (97-238)||(49640104-49640243)
chr4 (97-238)||(3734005-3734144)
chr4 (97-238)||(14701597-14701735)
chr4 (124-238)||(10385667-10385780)
chr4 (97-238)||(3719785-3719923)
chr4 (96-207)||(10247491-10247602)
chr4 (96-205)||(23652969-23653078)
chr4 (23-91)||(2541375-2541443)
chr4 (96-237)||(11560501-11560642)
chr4 (37-90)||(7395279-7395332)
chr4 (146-238)||(33400621-33400712)
chr4 (170-238)||(56089603-56089670)
chr4 (35-87)||(22093481-22093533)
[»] scaffold0062 (2 HSPs)
scaffold0062 (103-237)||(68071-68202)
scaffold0062 (103-237)||(53172-53303)
[»] scaffold0214 (3 HSPs)
scaffold0214 (75-237)||(19727-19884)
scaffold0214 (75-237)||(13277-13435)
scaffold0214 (75-237)||(27293-27451)
[»] scaffold0067 (1 HSPs)
scaffold0067 (97-238)||(27053-27192)
[»] scaffold0012 (2 HSPs)
scaffold0012 (97-238)||(31354-31492)
scaffold0012 (119-237)||(27169-27285)
[»] scaffold0175 (1 HSPs)
scaffold0175 (97-238)||(28949-29087)
[»] scaffold0360 (2 HSPs)
scaffold0360 (149-232)||(2206-2287)
scaffold0360 (149-232)||(6032-6113)
[»] scaffold0134 (1 HSPs)
scaffold0134 (166-238)||(6996-7067)
[»] scaffold0043 (1 HSPs)
scaffold0043 (170-237)||(13354-13420)
[»] scaffold0014 (1 HSPs)
scaffold0014 (104-141)||(227049-227086)
[»] scaffold0401 (1 HSPs)
scaffold0401 (170-238)||(4021-4088)
[»] scaffold1048 (1 HSPs)
scaffold1048 (197-238)||(1192-1232)
[»] scaffold0273 (1 HSPs)
scaffold0273 (170-238)||(19974-20041)
[»] scaffold0083 (1 HSPs)
scaffold0083 (170-238)||(52881-52948)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 28562876 - 28562648
Alignment:
Q  10 agagaaccgagccacaacatagtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagccatg 109  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28562876 agagacccgagccacaacatggtttcatggttaattttatttcccatgctattaatttgtatctctatgtctagctaatttccctcttgattaagccatg 28562777  T
Q  110 atgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcaga 209  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28562776 atgaatctattgtaatatatgaatcagtagttgatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcaga 28562677  T
Q  210 taattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||||||||||    
T  28562676 taattgctttgtatgactattaaccctag 28562648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 28566444 - 28566216
Alignment:
Q  10 agagaaccgagccacaacatagtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagccatg 109  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28566444 agagacccgagccacaacatggtttcatggttaattttatttcccatgctattaatttgtatctctatgtctagctaatttccctcttgattaagccatg 28566345  T
Q  110 atgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcaga 209  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28566344 atgaatctattgtaatatatgaatcagtagttgatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcaga 28566245  T
Q  210 taattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||||||||||    
T  28566244 taattgctttgtatgactattaaccctag 28566216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 26547761 - 26547923
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  26547761 atgtctagctaatttccttgttgattaagccatgatgaacctattttaatatatgaatcagtagttgatactctctttattattaatgttattcagtctt 26547860  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26547861 tattcagaattacttgtgttcattgcttttcagataattgttttgtatgactattaaccctag 26547923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 26551320 - 26551482
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  26551320 atgtctagctaatttccttgttgattaagccatgatgaacctattttaatatatgaatcagtagttgatactctctttattattaatgttattcagtctt 26551419  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26551420 tattcagaattacttgtgttcattgcttttcagataattgttttgtatgactattaaccctag 26551482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 4732262 - 4732120
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4732262 ttgattgagccatgttgaacctattgtaatatatgaatcagtagttgatcttctctttattattaatcttattcagtctttattcagaattacttgtgtt 4732163  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  4732162 cattgctttttatataattgctttgtatgactattaaccctag 4732120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 25185074 - 25185216
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||| |||||||| |||| ||||||||||    
T  25185074 ttgattgagccatgatgaacctattgtaatatatgaatcagtagttgatactctctttgttattaatattattcaatctttatttagaaatacttgtgtt 25185173  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||| | || |||| ||| |||||||| |||||||||    
T  25185174 cattgctttttatatgattgttttatatgactaataaccctag 25185216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 19689239 - 19689382
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| |||||||||||| |||||||||||||||||||||||||| |  ||||||||||||| ||| |||||||||||||||||||||||| |||||||    
T  19689239 ttgattgagccatgatgaatctattgtaatatatgaatcagtagttgaaactctctttattatcaatattattcagtctttattcagaattatttgtgtt 19689338  T
Q  196 cattgcttttcagata--attgctttgtatgactattaaccctag 238  Q
    |||||||||||| |||  |||| |||| |||||||||||||||||    
T  19689339 cattgcttttcatatatgattg-tttgcatgactattaaccctag 19689382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 19685856 - 19685999
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||| || |||||||||||||||||||||||||| |  ||||||||||||| ||| |||||||||||||||||||||||| |||||||    
T  19685856 ttgattgagccatgataaatctattgtaatatatgaatcagtagttgaaactctctttattatcaatattattcagtctttattcagaattatttgtgtt 19685955  T
Q  196 cattgcttttcagata--attgctttgtatgactattaaccctag 238  Q
    |||||||||||| |||  |||| |||| |||||||||||||||||    
T  19685956 cattgcttttcatatatgattg-tttgcatgactattaaccctag 19685999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 34653171 - 34653045
Alignment:
Q  110 atgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcaga 209  Q
    ||||| |||||||||||||||||| ||||||| |  ||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| |    
T  34653171 atgaatctattgtaatatatgaattagtagttgaaactctctttattatcaatattattcagtctttattcagaattatttgtgttcattgcttttcata 34653072  T
Q  210 taattgctttgtatgactattaacccta 237  Q
    | |||| |||| ||||||||||||||||    
T  34653071 tgattg-tttgcatgactattaacccta 34653045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 76 - 237
Target Start/End: Original strand, 2453008 - 2453161
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||| |  |||| |||||||| ||| ||||||||||||    
T  2453008 atgtctagctaatt-ccct-ttgattgagccatgatgaacctattgtaatatatgaattagtagttgaaactct-tttattatcaatattattcagtctt 2453104  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||||||||||| |||| |||||||||||||| || |||||     ||||||||||||||||    
T  2453105 tattcagaattatttgtattcattgcttttcatatgattgc-----atgactattaacccta 2453161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 26726638 - 26726772
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||||||| || |||||||  ||| |||| ||||| |||||||||||||||| |||||||||     
T  26726638 tgattgagccatgatgaacct-ttgtaatatatgatttagtagttgatactctcttatttaataatattattaagtctttattcagaatcacttgtgttt 26726736  T
Q  197 attgcttttcagataattgctttgtatgactattaacc 234  Q
    ||||| ||||| |||||||| |||||||||||||||||    
T  26726737 attgc-tttcatataattgc-ttgtatgactattaacc 26726772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 17944409 - 17944480
Alignment:
Q  166 attcagtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||| || |||||||||||||| | || |||| |||| |||||||||||||||||    
T  17944409 attcagtctttattcagaattatttatgttcattgctttttatatgattg-tttgcatgactattaaccctag 17944480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 33920904 - 33920971
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| ||||||||||||||||||  || |||| |||| |||||||||||||||||    
T  33920904 agtctttattcagaattatttgtgttcattgcttttcgtatgattg-tttgcatgactattaaccctag 33920971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 1810765 - 1810698
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||||||||| ||||||| |||||||||||| |||||| || |||| |||| ||||||||||||||||    
T  1810765 agtctttattgagaattatttgtgttcattgtttttcatatgattgttttgcatgactattaacccta 1810698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 42062568 - 42062624
Alignment:
Q  34 tcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttc 91  Q
    |||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||    
T  42062568 tcatggttaattttattttc-acgctctttatttgtatctctatgtctagctaatttc 42062624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 3194888 - 3194927
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatca 135  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  3194888 ttgattgagccatgatgaacctattgtaatatatgaatca 3194927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 26337745 - 26337813
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctagt 239  Q
    |||||||||||||||||| ||||||| ||||||||||  || |||| | || ||||||||||||||||||    
T  26337745 agtctttattcagaattatttgtgtttattgcttttcgtatgattg-tatgaatgactattaaccctagt 26337813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 40800246 - 40800205
Alignment:
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  40800246 attgtttttcagataattgttttgtatgactattaaccctag 40800205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 9690525 - 9690592
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||| ||||| ||||||||||||||||||  |  |||| |||| |||||||||||||||||    
T  9690525 agtctttattcataattatttgtgttcattgcttttcgtacgattg-tttgcatgactattaaccctag 9690592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 2783723 - 2783951
Alignment:
Q  10 agagaaccgagccacaacatagtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagccatg 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2783723 agagaaccgagccacaacatggtttcatggttaattttatttcccatgctattaatttgtatctctatgtctagctaatttccctcttgattaagccatg 2783822  T
Q  110 atgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcaga 209  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2783823 atgaatctattgtaatatatgaatgagtagttgatcctctctttagtattaatgttattcagtctttattcagaattacttgtgttcattgcttttcaga 2783922  T
Q  210 taattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||||||||||    
T  2783923 taattgctttgtatgactattaaccctag 2783951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 30158487 - 30158320
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    ||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  30158487 atgtctagctaatttccttattgattaagccatgatgaccctattgtaatatatgaatcagtagttgatactctctttattattaatgttattcagtctt 30158388  T
Q  176 tattcagaattacttg-----tgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||    
T  30158387 tattcagaattacttgtgttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 30158320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 10963096 - 10963237
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10963096 ttgattgagccatgatgaaccttttgtaatatatgaatcagtagttgatactctctttattattaatgttattcagtctttattcagaattacgtgtgtt 10963195  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  10963196 cattgcttttcatataattg-tttgtatgactattaaccctag 10963237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 10966605 - 10966746
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10966605 ttgattgagccatgatgaaccttttgtaatatatgaatcagtagttgatactctctttattattaatgttattcagtctttattcagaattacgtgtgtt 10966704  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  10966705 cattgcttttcatataattg-tttgtatgactattaaccctag 10966746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 10959589 - 10959730
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| || |||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10959589 ttgattgaggcatgatgaaccttttgtaatatatgaatcagtagttgatactctctttattattaatgttattcagcctttattcagaattacttgtgtt 10959688  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||| |||||||| |||||||||||| ||||||||    
T  10959689 cattgcttttcatataattgc-ttgtatgactatcaaccctag 10959730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 25888860 - 25888734
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    ||||||||||||||   || ||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  25888860 atgtctagctaatt---cttttgattaagccatgatgaatctattgtaatatatgaatcagtagttgatactctctttattattaatgttattcagtctt 25888764  T
Q  176 tattcagaattacttgtgttcattgctttt 205  Q
    ||||||||||||||||||||||||| ||||    
T  25888763 tattcagaattacttgtgttcattgttttt 25888734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 76 - 237
Target Start/End: Original strand, 9157660 - 9157817
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    ||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||| ||||||||||||    
T  9157660 atgtctagctaatttcctt--tgattgagccatgatgaacctattgtaatatatgaatcagtagttgaac-tctctttattatcaatattattcagtctt 9157756  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||||||||||| ||||||||||||||||||| || |||| |||| ||||||| ||||||||    
T  9157757 tattcagaattatttgtgttcattgcttttcatatgattg-tttgcatgactagtaacccta 9157817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 18882902 - 18883043
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| |||||||||||| |||||||||||||||||||||||||| |   |||||||||||| ||| |||||||||||||||||||||||| |||||||    
T  18882902 ttgattgagccatgatgaatctattgtaatatatgaatcagtagttgaaaatctctttattatcaatattattcagtctttattcagaattatttgtgtt 18883001  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||| || |||| |||| |||||||||||||||||    
T  18883002 cattgcttttcatatgattg-tttgcatgactattaaccctag 18883043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 44508504 - 44508638
Alignment:
Q  103 agccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgct 202  Q
    ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||| ||||||| |||||||||||||||| |||||||||||| |    
T  44508504 agccatgatgaacctattgtaatatatgaatcagtagttaaaactctctttattatcaatattattcaatctttattcagaattatttgtgttcattgtt 44508603  T
Q  203 tttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| || |||| |||| |||||||||||||||||    
T  44508604 tttcatatgattg-tttgcatgactattaaccctag 44508638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 29234013 - 29233874
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||| || ||||| |  ||| |||| |||||||||||||||||||||||| ||||||||    
T  29234013 tgattgagccatgatgaacct-ttgtaatatatgaattagtagttgatactctcgtatttaataatattattcagtctttattcagaattatttgtgttc 29233915  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||| |||||| |||||||| |||||||||||||||||||||    
T  29233914 attgtttttcatataattgc-ttgtatgactattaaccctag 29233874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 5887409 - 5887270
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||    
T  5887409 tgattgagccatgatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttc 5887311  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||||| | | |||||||||||||||||    
T  5887310 attgcttttcatataattgc-tcggatgactattaaccctag 5887270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 5897393 - 5897254
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||    
T  5897393 tgattgagccatgatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttc 5897295  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||||| | | |||||||||||||||||    
T  5897294 attgcttttcatataattgc-tcggatgactattaaccctag 5897254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 6173778 - 6173640
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||| || |||||||  ||| |||| |||||||||||||||||||||| ||||||||||    
T  6173778 tgattaagccatgatgaacct-ttgtaatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcagaatcacttgtgttc 6173680  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| |||||  |||||| ||||||||||||||||||||||    
T  6173679 attgc-tttcatttaattg-tttgtatgactattaaccctag 6173640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 23375155 - 23375016
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| ||||||||| |||||||||||||| ||||||||    
T  23375155 tgattgagccatgatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtttttattcagaattatttgtgttc 23375057  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||||| | |||||||||||||||||||    
T  23375056 attgcttttcatataattgc-tcgtatgactattaaccctag 23375016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 42354856 - 42354700
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    ||||||||||||||  ||| |||||| || ||||||||||||||||||||||||||||  |||||| |   | |||||||||| ||| ||||||||||||    
T  42354856 atgtctagctaatt--cct-ttgattgagtcatgatgaacctattgtaatatatgaat--gtagttgaaattgtctttattatcaatattattcagtctt 42354762  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||| | ||||||||||||||||||| || |||| |||| |||||||||||||||||    
T  42354761 tattcagaatcatttgtgttcattgcttttcatatgattg-tttgcatgactattaaccctag 42354700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 237
Target Start/End: Original strand, 9154487 - 9154644
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |   ||||||||||||  || ||| || |||||    
T  9154487 atgtctagctaatt-ccct-ttgattgagccatgatgaacctattgtaatatatgaatcagtagttga-aatctctttattatcgatattactcggtctt 9154583  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||||||||||| |||| |||||||||||||| || |||| |||| ||||||| ||| ||||    
T  9154584 tattcagaattatttgtattcattgcttttcatatgattg-tttgcatgactagtaatccta 9154644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 16415180 - 16415042
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||||||| || |||||||  ||| |||| ||||||||||||||||||||||  ||||||||     
T  16415180 tgattgagccatgatgaacct-ttgtaatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcagaatcgcttgtgttt 16415082  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  16415081 attgc-tttcatataattgc-ttgtatgactattaaccctag 16415042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 18516154 - 18516016
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||||||| || |||||||  ||| |||| ||||||||||||||||||||||  ||||||||     
T  18516154 tgattgagccatgatgaacct-ttgtaatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcagaatcgcttgtgttt 18516056  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  18516055 attgc-tttcatataattgc-ttgtatgactattaaccctag 18516016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 16315014 - 16314876
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| |||||| |||||||| |||| |||||||| | ||||||| || |||||||  ||| |||| |||||||||||||||||||||| |||| ||||     
T  16315014 tgattgagccataatgaacct-ttgtgatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcagaatcacttatgttt 16314916  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  16314915 attgc-tttcatataattgc-ttgtatgactattaaccctag 16314876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 18496008 - 18495870
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| |||||| |||||||| |||| |||||||| | ||||||| || |||||||  ||| |||| |||||||||||||||||||||| |||| ||||     
T  18496008 tgattgagccataatgaacct-ttgtgatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcagaatcacttatgttt 18495910  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  18495909 attgc-tttcatataattgc-ttgtatgactattaaccctag 18495870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 20536994 - 20536866
Alignment:
Q  106 catgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgctttt 205  Q
    |||||||||||||| ||||||| ||||||||| ||| |    ||||||||||| ||| |||| ||||||||||||| ||||| |||||||||||||||||    
T  20536994 catgatgaacctatggtaatatgtgaatcagtggttga--aactctttattatcaatattatgcagtctttattcaaaattatttgtgttcattgctttt 20536897  T
Q  206 cagataattgctttgtatgactattaacccta 237  Q
    |  || |||| |||||||||||||||||||||    
T  20536896 cttatgattg-tttgtatgactattaacccta 20536866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 234
Target Start/End: Complemental strand, 2280045 - 2279911
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| || |||||||||| | ||||| | || |||||||  ||| |||||||||||||| |||||||||||||| ||||||||    
T  2280045 tgattgagccatgatgaacct-ttataatatatgatttagtagctgatactctcttatttaataatgttattcagtttttattcagaattatttgtgttc 2279947  T
Q  197 attgcttttcagataattgctttgtatgactattaacc 234  Q
    ||||| |||||  |||||||  ||||||||||||||||    
T  2279946 attgc-tttcatttaattgc-ctgtatgactattaacc 2279911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 19868744 - 19868812
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| |||||||  |||||||||| || ||||||||| |||||||||||||||||    
T  19868744 agtctttattcagaattatttgtgtttgttgcttttcatatgattgctttgcatgactattaaccctag 19868812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 4250148 - 4250214
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||||||||||||||||| ||||||||||||||||||  || |||| |||| ||||||||||||||||    
T  4250148 agtctttattcagaattatttgtgttcattgcttttcgtatgattg-tttgcatgactattaacccta 4250214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 35412247 - 35412304
Alignment:
Q  34 tcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttcc 92  Q
    |||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||    
T  35412247 tcatggttaattttattttc-acgctctttatttgtatctctatgtctagctaatttcc 35412304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 18645167 - 18645111
Alignment:
Q  34 tcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttc 91  Q
    |||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||    
T  18645167 tcatggttaattttattttc-acgctctttatttgtatctctatgtctagctaatttc 18645111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 3305612 - 3305679
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| ||||| | | ||||||||  || |||| |||||||||||| |||||||||    
T  3305612 agtctttattcagaattatttgtgcttaatgcttttcttatgattg-tttgtatgactactaaccctag 3305679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 28327206 - 28327273
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| ||||| | | ||||||||  || |||| |||||||||||| |||||||||    
T  28327206 agtctttattcagaattatttgtgcttaatgcttttcttatgattg-tttgtatgactactaaccctag 28327273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 28330531 - 28330598
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| ||||| | | ||||||||  || |||| |||||||||||| |||||||||    
T  28330531 agtctttattcagaattatttgtgcttaatgcttttcttatgattg-tttgtatgactactaaccctag 28330598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 13517906 - 13518134
Alignment:
Q  10 agagaaccgagccacaacatagtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagccatg 109  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13517906 agagaaccgagccacaacatggtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagctatg 13518005  T
Q  110 atgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcaga 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |    
T  13518006 atgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcaaaattacttgtgttcatagcttttcaaa 13518105  T
Q  210 taattgctttgtatgactattaaccctag 238  Q
    |||||| ||||||||||||||||||||||    
T  13518106 taattgatttgtatgactattaaccctag 13518134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 11059398 - 11059629
Alignment:
Q  10 agagaaccgagccacaacatagtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagccatg 109  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11059398 agagaaccgagcaacaacatggtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagccatg 11059497  T
Q  110 atgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatg---ttattcagtctttattcagaattacttgtgttcattgcttttc 206  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||||||||||   |||||||||||||||||||| |||||||||||||||| |||||    
T  11059498 atgaacctattgtaataaatgaatcagtagttgatactctctttattattaatgttattattcagtctttattcagagttacttgtgttcattgtttttc 11059597  T
Q  207 agataattgctttgtatgactattaaccctag 238  Q
    ||||||||||||||||||||||||||||||||    
T  11059598 agataattgctttgtatgactattaaccctag 11059629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 18011638 - 18011780
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| | |||||||||||||    
T  18011638 ttgattgagccatgatgaacctattgtaatatataaatcagtagttgatactctctttattattaatgttattcagtctttatttataattacttgtgtt 18011737  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||| | ||| ||||||||||||||||||||||||||    
T  18011738 cattgctttttatatagttgctttgtatgactattaaccctag 18011780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 15719645 - 15719514
Alignment:
Q  103 agccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgct 202  Q
    ||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15719645 agccatgatgaacct-ttgtaatatatgaattagtagttgatactctctttattattaatgttattcagtctttattcagaattacttgtgttcattg-t 15719548  T
Q  203 tttcagataattgctttgtatgactattaacccta 237  Q
    ||| | |||||||| || |||||||||||||||||    
T  15719547 ttttatataattgc-ttatatgactattaacccta 15719514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 1503861 - 1503722
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| |||||||||||||||||||||||||||||||  |||||| |  ||||||||||||| ||| |||||||||||||||||||||||| |||||||    
T  1503861 ttgattgagccatgatgaacctattgtaatatatgaat--gtagttgaaactctctttattatcaatattattcagtctttattcagaattatttgtgtt 1503764  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||| || ||||| ||| |||||||||||||||||    
T  1503763 cattgcttttcatatgattgc-ttgcatgactattaaccctag 1503722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 1507065 - 1506926
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| |||||||||||||||||||||||||||||||  |||||| |  ||||||||||||| ||| |||||||||||||||||||||||| |||||||    
T  1507065 ttgattgagccatgatgaacctattgtaatatatgaat--gtagttgaaactctctttattatcaatattattcagtctttattcagaattatttgtgtt 1506968  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| |||||| || ||||| ||| |||||||||||||||||    
T  1506967 cattgtttttcatatgattgc-ttgcatgactattaaccctag 1506926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 15704391 - 15704260
Alignment:
Q  103 agccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgct 202  Q
    ||||||||||||||| ||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |    
T  15704391 agccatgatgaacct-ttgtaatatatgaattagaagttgatactctctttattattaatgttattcagtctttatttagaattatttgtgttcattg-t 15704294  T
Q  203 tttcagataattgctttgtatgactattaacccta 237  Q
    ||| | |||||||| ||||||||||||||||||||    
T  15704293 ttttatataattgc-ttgtatgactattaacccta 15704260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 29435442 - 29435580
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||| ||  |||||| |||| ||||| |||||||||||||||||||||||||||||||    
T  29435442 ttgattgagccatgatgaacct-ttgtaatatatgaattagtagttgatattctctt-attaataatgctattcagtctttattcagaattacttgtgtt 29435539  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||| ||||| |||||||| |||||||||||||||||||||    
T  29435540 cattgc-tttcatataattgc-ttgtatgactattaaccctag 29435580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 38326040 - 38326199
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    |||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||| |  || |||||||||| ||| |||||| |||||    
T  38326040 atgtctagctaatt-ccct-ttgattgagccatgatgaacctattggaatatatgaatcagtagttgaaactttctttattatcaatattattccgtctt 38326137  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||| ||||||||||| ||||| | || |||| |||| |||||||||||||||||    
T  38326138 tattcagaattatttgtgttcattacttttgatatgattg-tttgcatgactattaaccctag 38326199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 38326719 - 38326560
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    |||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||| |  || |||||||||| ||| |||||| |||||    
T  38326719 atgtctagctaatt-ccct-ttgattgagccatgatgaacctattggaatatatgaatcagtagttgaaactttctttattatcaatattattccgtctt 38326622  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||| ||||||||||| ||||| | || |||| |||| |||||||||||||||||    
T  38326621 tattcagaattatttgtgttcattacttttgatatgattg-tttgcatgactattaaccctag 38326560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 18938586 - 18938725
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||    
T  18938586 tgattgagccatgatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttc 18938684  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||||| | | |||||||||||||||||    
T  18938685 attgcttttcatataattgc-tcggatgactattaaccctag 18938725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 22592206 - 22592344
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||||||| || |||||||  ||| |||| |||||||||||||||||||||| || ||||||     
T  22592206 tgattgagccatgatgaacct-ttgtaatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcagaatcacatgtgttt 22592304  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  22592305 attgc-tttcatataattgc-ttgtatgactattaaccctag 22592344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 4577594 - 4577681
Alignment:
Q  146 ctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||| |||||||| ||| |||||||||   |||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  4577594 ctctttttattatcaatattattcagt---tattcagaattatttgtgttcattgcttttcatataattg-tttgcatgactattaacccta 4577681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 40678128 - 40678061
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| ||||| | | ||||||||  || |||| |||||||||||| |||||||||    
T  40678128 agtctttattcagaattatttgtgcttaatgcttttcttatgattg-tttgtatgactactaaccctag 40678061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 37641535 - 37641697
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    ||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  37641535 atgtctagctaatttccttgttgattaagccatgataaacctattgtaatatatgaatcagtagttgatactctctttattattaatgttattcagtctt 37641634  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37641635 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 37641697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 28918069 - 28918204
Alignment:
Q  103 agccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgct 202  Q
    ||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28918069 agccatgatgaaccttttgtaatatatgaatcagtagttgatactctctttattattaatgttattcagtctttattcagaattacttgtgttcattgct 28918168  T
Q  203 tttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| |||||||  |||||||||||||||||||||    
T  28918169 tttcatataattgtgttgtatgactattaaccctag 28918204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 17903216 - 17903076
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||| | ||||||||||||||| ||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17903216 ttgattgagccatgatgaacattttgtaatatatgaattagtagttgatactctcttaattattaatgttattcagtctttattcagaattacttgtgtt 17903117  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||| ||||| |||||| | |||||||||||||||||||||    
T  17903116 cattgc-tttcatataatttc-ttgtatgactattaaccctag 17903076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 49716062 - 49716200
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||| ||  |||||| |||| ||||| |||||||||||||||||||||||||||||||    
T  49716062 ttgattgagccatgatgaacct-ttgtaatatatgaattagtagttgatattctctt-attaataatgctattcagtctttattcagaattacttgtgtt 49716159  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||| ||||| |||||||| |||||||||||||||||||||    
T  49716160 cattgc-tttcatataattgc-ttgtatgactattaaccctag 49716200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 49719545 - 49719683
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||| ||  |||||| |||| ||||| |||||||||||||||||||||||||||||||    
T  49719545 ttgattgagccatgatgaacct-ttgtaatatatgaattagtagttgatattctctt-attaataatgctattcagtctttattcagaattacttgtgtt 49719642  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||| ||||| |||||||| |||||||||||||||||||||    
T  49719643 cattgc-tttcatataattgc-ttgtatgactattaaccctag 49719683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 16839360 - 16839221
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||    
T  16839360 tgattgagccatgatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttc 16839262  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||||| | | |||||||||||||||||    
T  16839261 attgcttttcatataattgc-tcggatgactattaaccctag 16839221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 16849290 - 16849151
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||    
T  16849290 tgattgagccatgatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttc 16849192  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||||| | | |||||||||||||||||    
T  16849191 attgcttttcatataattgc-tcggatgactattaaccctag 16849151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 20964148 - 20964282
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||||||| || |||||||  ||| ||||||||||||||||||||||||||||| ||||||||    
T  20964148 tgattgagccatgatgaacct-ttgtaatatatgatttagtagttgatactctcttatttaataatgttattcagtctttattcagaattatttgtgttc 20964246  T
Q  197 attgcttttcagataattgctttgtatgactattaacc 234  Q
    ||||| |||||  ||||||| |||||||||||||||||    
T  20964247 attgc-tttcatttaattgc-ttgtatgactattaacc 20964282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 24200670 - 24200532
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||| ||||||||||| ||||||||||||| | ||||||| || |||||||  ||| |||| |||||||||||||||||| ||| |||||||||     
T  24200670 tgattgagcaatgatgaacct-ttgtaatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcaaaatcacttgtgttt 24200572  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  24200571 attgc-tttcatataattgc-ttgtatgactattaaccctag 24200532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 237
Target Start/End: Original strand, 20981051 - 20981188
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||||||| || || ||||  ||| |||||||||||||||| |||||||||||| ||||||||    
T  20981051 tgattgagccatgatgaacct-ttgtaatatatgatttagtagttgatactatcttatttaataatgttattcagtctatattcagaattatttgtgttc 20981149  T
Q  197 attgcttttcagataattgctttgtatgactattaacccta 237  Q
    ||||| |||||  |||||||  |||||||||||||||||||    
T  20981150 attgc-tttcatttaattgc-atgtatgactattaacccta 20981188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 23441640 - 23441573
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| ||||| | | ||||||||  || |||| |||||||||||| |||||||||    
T  23441640 agtctttattcagaattatttgtgcttaatgcttttcttatgattg-tttgtatgactactaaccctag 23441573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 33898088 - 33898155
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| ||||| | | ||||||||  || |||| |||||||||||| |||||||||    
T  33898088 agtctttattcagaattatttgtgcttaatgcttttcttatgattg-tttgtatgactactaaccctag 33898155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 14969337 - 14969497
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    |||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  14969337 atgtcttgctaatttccttgttgattaagccatgatgaacctattgtaatatatgaatcagtagttgatactctctttattattaatgttattcagtctt 14969436  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  14969437 tattcagaattact--tgttcattgcttttcagataattgctttgtatgactattaaccctag 14969497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 17231546 - 17231684
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| |||||||||||| || ||||||||||||||| ||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17231546 ttgattgagccatgatgaagct-ttgtaatatatgaattagtagtcgatactctctttattattaatgttattcagtctttattcagaattacttgtgtt 17231644  T
Q  196 cattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||||| ||||| |||||||| ||||||||||||||||||||    
T  17231645 cattgc-tttcatataattgc-ttgtatgactattaacccta 17231684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 11410456 - 11410594
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||| || ||||||| |||| ||||||||||||||||||||||||||||||||||||     
T  11410456 ttgattgagccatgatgaacct-ttgtaatatatgaattagtagttgatactctctt-attaataatgttattcagtctttattcagaattacttgtgtc 11410553  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||| ||||| |||||||| |||||||||||||||||||||    
T  11410554 cattgc-tttcatataattgc-ttgtatgactattaaccctag 11410594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 22920220 - 22920359
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||| ||| ||||||||    
T  22920220 tgattgagccatgatgaacct-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagagttatttgtgttc 22920318  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  22920319 attgcttttcatataattgc-ttgtatgactattaaccctag 22920359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 17696277 - 17696417
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatg-ttattcagtctttattcagaattacttgtgt 194  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| |||| |||||||||||||||| ||||||| ||||||    
T  17696277 ttgattgagccatgatgaacctattgtaatatatgaatcagtagttga-actctctttattatcaatgattattcagtctttatttagaattatttgtgt 17696375  T
Q  195 tcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||| |||||||| || | || |||||||||||||||||||||    
T  17696376 tcatcgcttttcatatgactg-tttgtatgactattaacccta 17696417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 118 - 238
Target Start/End: Original strand, 34502053 - 34502172
Alignment:
Q  118 attgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcagataattgct 217  Q
    |||||||||||||||||||||||| |  ||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| || |||| |    
T  34502053 attgtaatatatgaatcagtagttgaaactctctttattatcaatattattcagtctttattcagaattatttgtgttcattgcttttcatatgattg-t 34502151  T
Q  218 ttgtatgactattaaccctag 238  Q
    ||| |||||||||||||||||    
T  34502152 ttgcatgactattaaccctag 34502172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 13096112 - 13095988
Alignment:
Q  110 atgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcaga 209  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| |||||||  ||||| |    
T  13096112 atgaacct-ttgtaatatatgaattagtagttgatactctctttattaataatgttattcagtctttattcagaattacttgtattcattg-atttcata 13096015  T
Q  210 taattgctttgtatgactattaacccta 237  Q
    ||||||| ||||||||||||||||||||    
T  13096014 taattgc-ttgtatgactattaacccta 13095988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 2330318 - 2330459
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| |||||||||||||||||||||||||||| |||||||||| |  ||||||||||||| ||| |||||||||||||||||| ||||| |||||||    
T  2330318 ttgattgagccatgatgaacctattgtaatatatggatcagtagttgaagctctctttattatcaatattattcagtctttattcataattatttgtgtt 2330417  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| |||||| || |||  |||| |||||||||||| ||||    
T  2330418 cattgtttttcatatgatt-atttgcatgactattaactctag 2330459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 3827225 - 3827106
Alignment:
Q  117 tattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcagataattgc 216  Q
    ||||||| ||||||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||| |||| || |||| |||| | ||||||||    
T  3827225 tattgtattatatgaattagtagttgatactct-tttattattaatgttattcagtctttattcagaattatttgtatttattgttttttatataattgc 3827127  T
Q  217 tttgtatgactattaacccta 237  Q
    |||||||||||||||||||||    
T  3827126 tttgtatgactattaacccta 3827106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 7560605 - 7560464
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| | |||||||||||||||||| |||| ||||||||||||| |  ||||||||||||| ||| |||||||||||||||||||||||| || ||||    
T  7560605 ttgattgaaccatgatgaacctattgtgatatgtgaatcagtagttgaaactctctttattatcaatattattcagtctttattcagaattatttatgtt 7560506  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    || || |||||  || |||| |||||||||| |||||||||||    
T  7560505 cagtgtttttcttatgattg-tttgtatgacaattaaccctag 7560464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 20189935 - 20189837
Alignment:
Q  23 acaacatagtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagccatgatgaacctattgt 122  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||   |||||||||||| |||||| |||||||    
T  20189935 acaacatggtttcatggttaattttattttccatgctatttatgtgtatctctatgtctagctaatttcc--tttgattaagccaagatgaatctattgt 20189838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 22146056 - 22146154
Alignment:
Q  23 acaacatagtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagccatgatgaacctattgt 122  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||   |||||||||||| |||||| |||||||    
T  22146056 acaacatggtttcatggttaattttattttccatgctatttatgtgtatctctatgtctagctaatttcc--tttgattaagccaagatgaatctattgt 22146153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 16730989 - 16731087
Alignment:
Q  23 acaacatagtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagccatgatgaacctattgt 122  Q
    |||||||  ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||   |||||||||||| | |||| |||||||    
T  16730989 acaacatgttttcatggttaattttagttttcatgctatttatttgtatctctatgtctagctaatttcc--tttgattaagccaaggtgaatctattgt 16731086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 31123118 - 31123259
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatca-gtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgt 194  Q
    |||||| |||||| ||||| |||||||||||| |||| || |||||| | | |||||||||||| |||| |||  |||||||||||||||||| |||| |    
T  31123118 ttgattgagccattatgaagctattgtaatatgtgaaccaagtagttgaac-tctctttattataaatgatatgtagtctttattcagaattatttgttt 31123216  T
Q  195 tcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||   || |||| |||| |||||||||||||||||    
T  31123217 tcattgcttttattatgattg-tttgcatgactattaaccctag 31123259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 31262509 - 31262595
Alignment:
Q  146 ctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaac 233  Q
    ||||||||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||| || |||| |||| |||| |||||||    
T  31262509 ctctctttattatcaattttattcggtctttattcagaattatttgtgttcattgcttttcatatgattg-tttgcatgattattaac 31262595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 2330981 - 2331055
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattca 170  Q
    |||||| |||||||||||||||||||||||||||| |||||||||| |  ||||||||||||| ||| |||||||    
T  2330981 ttgattgagccatgatgaacctattgtaatatatggatcagtagttgaagctctctttattatcaatattattca 2331055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 9314145 - 9314074
Alignment:
Q  166 attcagtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||| || |||||||||||||| | || |||| |||| |||||||||||||||||    
T  9314145 attcagtctttattcagaattatttatgttcattgctttttatatgattg-tttgcatgactattaaccctag 9314074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 12746568 - 12746635
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| ||||||||||||||||||  || |||| |||| |||||||||||||||||    
T  12746568 agtctttattcagaattatttgtgttcattgcttttcgtatgattg-tttgcatgactattaaccctag 12746635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 22464173 - 22464243
Alignment:
Q  166 attcagtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    ||||||| |||||||||||||| || |||||||||||||| | || |||| |||| ||||||||||||||||    
T  22464173 attcagtttttattcagaattatttatgttcattgctttttatatgattg-tttgcatgactattaacccta 22464243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 33679544 - 33679478
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||||||||| ||||||| ||||||||||||||||||  || |||| |||| ||||||||||||||||    
T  33679544 agtctttatttagaattatttgtgttcattgcttttcgtatgattg-tttgcatgactattaacccta 33679478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 28117598 - 28117669
Alignment:
Q  166 attcagtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||| || |||||||||||||| | || |||| |||  |||| ||||||||||||    
T  28117598 attcagtctttattcagaattatttatgttcattgctttttatatgattg-ttttcatgattattaaccctag 28117669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 5618656 - 5618597
Alignment:
Q  178 ttcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||| ||||| ||||||| ||||||||||| || |||| |||| |||||||||||||||||    
T  5618656 ttcataattatttgtgtttattgcttttcatatgattg-tttgcatgactattaaccctag 5618597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 5963924 - 5964086
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    ||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||  ||||||||||    
T  5963924 atgtctagctaatttccttgttgattaagccatgatgatcctattgtaatatatgaatcagtagttgatactctctgtattattaatgcgattcagtctt 5964023  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5964024 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 5964086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 22653950 - 22654092
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22653950 ttgattgagccatgatgaacctattgtaatatatgaatcaatagttgatactctctttattattaatgttattcagtctttattcagaattacttgtgtt 22654049  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||| | || |||||||||||||||||||||||||||    
T  22654050 cattgctttttatattattgctttgtatgactattaaccctag 22654092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 27863985 - 27863843
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27863985 ttgattgagccatgatgaacctattgtactatatgaatcagtagttgatactctctttattattaatgttattcagtctttattcagaattacttgtgtt 27863886  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||| | || |||| ||||||||||||||||||||||    
T  27863885 cattgctttttatatgattgttttgtatgactattaaccctag 27863843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 14187696 - 14187830
Alignment:
Q  103 agccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgct 202  Q
    ||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14187696 agccatgataaatctattgtaatatatgaatcagtagttgatactctctttattattaatgttattcagtctttattcagaattacttgtgttcattgct 14187795  T
Q  203 tttcagataattgctttgtatgactattaacccta 237  Q
    ||| | ||||||||||||||||||||| |||||||    
T  14187796 ttttatataattgctttgtatgactataaacccta 14187830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 20262246 - 20262384
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20262246 ttgattgagccatgatgaacct-ttgtaatatatgaattagtagttgatactctctttattattaatgttattcagtctttattcagaattacttgtgtt 20262344  T
Q  196 cattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||||| ||||| |||||||| ||||||||||||||||||||    
T  20262345 cattgc-tttcatataattgc-ttgtatgactattaacccta 20262384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 21048876 - 21049014
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21048876 ttgattgagccatgatgaacct-ttgtaatatatgaattagtagttgatactctctttattattaatgttattcagtctttattcagaattacttgtgtt 21048974  T
Q  196 cattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||||| ||||| |||||||| ||||||||||||||||||||    
T  21048975 cattgc-tttcatataattgc-ttgtatgactattaacccta 21049014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 18696347 - 18696216
Alignment:
Q  103 agccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgct 202  Q
    ||||||||||||||| ||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |    
T  18696347 agccatgatgaacct-ttgtaatatatgaattagaagttgatactctctttattattaatgttattcagtctttatttagaattatttgtgttcattg-t 18696250  T
Q  203 tttcagataattgctttgtatgactattaacccta 237  Q
    ||| | |||||||| ||||||||||||||||||||    
T  18696249 ttttatataattgc-ttgtatgactattaacccta 18696216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 107 - 237
Target Start/End: Original strand, 30645173 - 30645302
Alignment:
Q  107 atgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttc 206  Q
    ||||||||||||||||||||||||||| | ||||| |  ||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||     
T  30645173 atgatgaacctattgtaatatatgaattaatagttgaaactctctttattattaatattatccagtctttattcagaattatttgtgttcattgcttttg 30645272  T
Q  207 agataattgctttgtatgactattaacccta 237  Q
    | || |||| |||| ||||||||||||||||    
T  30645273 atatgattg-tttgcatgactattaacccta 30645302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 24434723 - 24434862
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||    
T  24434723 tgattgagccatgatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttc 24434821  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||| | | |||||||||||||||||||    
T  24434822 attgcttttcatataattac-tcgtatgactattaaccctag 24434862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 24444769 - 24444908
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||    
T  24444769 tgattgagccatgatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttc 24444867  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||| ||||||| |||||| | | |||||||||||||||||||    
T  24444868 atttcttttcatataattac-tcgtatgactattaaccctag 24444908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 17543742 - 17543880
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||| | | ||||||||||| | ||||||| || |||||||  ||| |||| |||||||||||||||||||||| |||||||||     
T  17543742 tgatttagccatgatgaactt-tcgtaatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcagaatcacttgtgttt 17543840  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  17543841 attgc-tttcatataattgc-ttgtatgactattaaccctag 17543880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 17013459 - 17013321
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||| | | ||||||||||| | ||||||| || |||||||  ||| ||||  ||||||||||||||||||||| |||||||||     
T  17013459 tgatttagccatgatgaactt-tcgtaatatatgatttagtagttgatactctcttatttaataataatattcagtctttattcagaatcacttgtgttt 17013361  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  17013360 attgc-tttcatataattgc-ttgtatgactattaaccctag 17013321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 24903910 - 24903773
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||  | ||||||| || |||||||  ||| || | |||||||||||||||||||||| |||||||||     
T  24903910 tgattgagccatgatgaacct-ttgtaatatatggtttagtagttgatactctcttatttaata-tattattcagtctttattcagaatcacttgtgttt 24903813  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  24903812 attgc-tttcatataattgc-ttgtatgactattaaccctag 24903773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 452896 - 452941
Alignment:
Q  159 taatgttattcagtctttattcagaattacttgtgttcattgcttt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  452896 taatgttattcagtctttattcagaattacttgtgttcattgcttt 452941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 31981048 - 31981123
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcag 171  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| |  |||| |||||||| ||| ||||||||    
T  31981048 ttgattgagccatgataaacctattgtaatatatgaatcagtagttgaaactctttttattatcaatattattcag 31981123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 5827789 - 5827856
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| ||||||||||||||||||  || |||| ||||  ||||||||||||||||    
T  5827789 agtctttattcagaattatttgtgttcattgcttttcttatgattg-tttgcttgactattaaccctag 5827856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 31984691 - 31984728
Alignment:
Q  104 gccatgatgaacctattgtaatatatgaatcagtagtt 141  Q
    |||||||| |||||||||||||||||||||||||||||    
T  31984691 gccatgataaacctattgtaatatatgaatcagtagtt 31984728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 11825806 - 11825644
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||    
T  11825806 atgtctagctaatttccttgttgattaagccatgatgaacctattgtaatatatgaatcagtagttgatactctctttattattaatgttattcaatctt 11825707  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||||||||    
T  11825706 tattcagaattacttgtgttcattacttttcacataattgttttatatgactattaaccctag 11825644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 5827153 - 5827001
Alignment:
Q  81 tagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattc 180  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  5827153 tagctaatttccttgttgattaagccatgatgaacctattgtaatatatgaatcagtagttgatactctctttattattaatgttattcagtctttattc 5827054  T
Q  181 agaattacttgtgttcattgcttttcagataattgctttgtatgactattaacc 234  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  5827053 agaattacttgtgttcattg-ttttcaaataattgctttgtatgactattaacc 5827001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 20100332 - 20100473
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20100332 ttgattgagccatgatgaacctattgtaatatatgaatcagtagttgatactctctttattattaatgttattcagtctttattcagaattacttgtgtt 20100431  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  20100432 cattgctttt-atataattgctttgtatgactattaaccctag 20100473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 22256929 - 22257087
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    |||||||| |||||||| |  ||||| |||||||||||||||||||||||||||||||  |||||| || |||||||||||||||| |||||||||||||    
T  22256929 atgtctagttaatttcctt--tgattgagccatgatgaacctattgtaatatatgaat--gtagttgatactctctttattattaacgttattcagtctt 22257024  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  22257025 tattcagaattacttgtgttcattgctttttatataattgctttgtatgactattaaccctag 22257087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 748471 - 748330
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  748471 tgattgagccatgatgaacctattgtaatatatgaatcagtagttgatactctctttattattaatgttattctgtctttattcagaattacttgtgttc 748372  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||| |||| | || | |||||||||||||| ||||||||||    
T  748371 attgttttttatatgactgctttgtatgacttttaaccctag 748330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 22233080 - 22232916
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcag----tagtttatcctctctttattattaatgttattcag 171  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||  |    ||||| || ||||||||| ||||||||||||| ||    
T  22233080 atgtctagctaatt-ccct-ttgattgagccatgatgaacctattgtaatatatgaatatgaatgtagttgatactctctttactattaatgttatttag 22232983  T
Q  172 tctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  22232982 tctttattcagaattacttgtgttcattgctttttatataattgttttgtatgactattaaccctag 22232916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 22253659 - 22253823
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcag----tagtttatcctctctttattattaatgttattcag 171  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||  |    ||||| || ||||||||| ||||||||||||| ||    
T  22253659 atgtctagctaatt-ccct-ttgattgagccatgatgaacctattgtaatatatgaatatgaatgtagttgatactctctttactattaatgttatttag 22253756  T
Q  172 tctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  22253757 tctttattcagaattacttgtgttcattgctttttatataattgttttgtatgactattaaccctag 22253823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 2349164 - 2349302
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||| ||||||||||||||| | ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2349164 tgattgagccatgataaacctattgtaatatgtaaatcagtagttgatactctctttattattaatgttattcagtctttattcagaattacttgtgttc 2349263  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||| ||||| |    |||| ||||||||||||||||||||||    
T  2349264 atttcttttta---tattgttttgtatgactattaaccctag 2349302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 8397526 - 8397674
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    ||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||               ||||||||||||||||||||||    
T  8397526 atgtctagctaatttccttgttgattaagtcatgatgaacctattgtaatatatgaatcagtaa--------------attattaatgttattcagtctt 8397611  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  8397612 tattcagaattacttgtgttcattgtttttcagataattgttttgtatgattattaaccctag 8397674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 26182014 - 26182132
Alignment:
Q  119 ttgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcagataattgctt 218  Q
    ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |    
T  26182014 ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttcattgcttttcatataattgc-t 26182112  T
Q  219 tgtatgactattaaccctag 238  Q
    ||||||||||||||||||||    
T  26182113 tgtatgactattaaccctag 26182132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 26809231 - 26809153
Alignment:
Q  32 tttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagccatga 110  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26809231 tttcatggttaattttattttccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagccatga 26809153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 26460157 - 26460296
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||    
T  26460157 tgattgagccatgatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttc 26460255  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||||| | | |||||||||||||||||    
T  26460256 attgcttttcatataattgc-tcggatgactattaaccctag 26460296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 710444 - 710306
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||||||| || |||||||  ||| |||| |||||||||||||||||||||| |||||||||     
T  710444 tgattgagccatgatgaacct-ttgtaatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcagaatcacttgtgttt 710346  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  710345 attgc-tttcatataattgc-ttgtatgactattaaccctag 710306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 2251563 - 2251701
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||| ||| || |||||||  ||| |||| |||||||| ||||||||||||| |||||||||     
T  2251563 tgattgagccatgatgaacct-ttgtaatatatgatttagtggttgatactctcttatttaataatattattcagcctttattcagaatcacttgtgttt 2251661  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||    
T  2251662 attgc-tttcatataattgcttt-tatgactattaaccctag 2251701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 97 - 234
Target Start/End: Complemental strand, 23599189 - 23599055
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||||||| || |||||||  ||| |||| |||||||||||||||||||||| |||||||||     
T  23599189 tgattgagccatgatgaacct-ttgtaatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcagaatcacttgtgttt 23599091  T
Q  197 attgcttttcagataattgctttgtatgactattaacc 234  Q
    |||||  |||| |||||||| |||||||||||||||||    
T  23599090 attgc-cttcatataattgc-ttgtatgactattaacc 23599055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 23467534 - 23467442
Alignment:
Q  75 tatgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattca 170  Q
    |||||||||||||||  ||| |||||| |||||||||||| |||||||||||||||||||||||||| |  ||||||||||||| ||| |||||||    
T  23467534 tatgtctagctaatt--cct-ttgattgagccatgatgaatctattgtaatatatgaatcagtagttgaaactctctttattatcaatattattca 23467442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 42606142 - 42606060
Alignment:
Q  113 aacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcatt 199  Q
    |||||||||||| ||||||||   ||||| || ||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||    
T  42606142 aacctattgtaacatatgaat---tagttgatactctctttattgttaatgtaattcaatctttattcagaatta-ttgtgttcatt 42606060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 3541524 - 3541457
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||| ||||||||||| ||||||||||||||||||  || |||| |||| |||||||||||||||||    
T  3541524 agtcttcattcagaattatttgtgttcattgcttttcgtatgattg-tttgaatgactattaaccctag 3541457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 22083798 - 22083732
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||||||||||||||||| || |||||||||||||| | || |||| |||| ||||||||||||||||    
T  22083798 agtctttattcagaattatttatgttcattgctttttatatgattg-tttgcatgactattaacccta 22083732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 38431155 - 38431222
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| ||||| | | ||||||||  || |||| |||||||||||| |||||||||    
T  38431155 agtctttattcagaattatttgtgcttactgcttttcttatgattg-tttgtatgactactaaccctag 38431222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 18859446 - 18859608
Alignment:
Q  76 atgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctt 175  Q
    |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||  ||||||||||||    
T  18859446 atgtttagctaatttccttgttgattaagccatgatgaacctattgtaatatatgaattagtagttgatactctctttattattaaaattattcagtctt 18859545  T
Q  176 tattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  18859546 tattcagaattacttgtgttcattgcttttcaaataattgatttgtatgactattaaccctag 18859608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 17670096 - 17670247
Alignment:
Q  100 ttaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcag-------------aatt 186  Q
    |||||||||||||||| ||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||             ||||    
T  17670096 ttaagccatgatgaacgtattgtaatatatgaattagtagttgatactctctttattattaatgttattcagtctttattcagaatctttattcaaaatt 17670195  T
Q  187 acttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  17670196 acttgtgttcattgctttttaaataattgttttgtatgactattaaccctag 17670247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 11703015 - 11702876
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| ||||||||| |||||||||||||||||||||  |||||| |  ||||||||||||| ||| |||||||||||||||||||||| | |||||||    
T  11703015 ttgattgagccatgataaacctattgtaatatatgaat--gtagttgaaactctctttattatcaatattattcagtctttattcagaataatttgtgtt 11702918  T
Q  196 cattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||| || |||| |||| |||||||||||||||||    
T  11702917 cattgcttttcatatgattg-tttgcatgactattaaccctag 11702876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 49636950 - 49636811
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||    
T  49636950 tgattgagccatgatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttc 49636852  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||||| | |||| ||||||||||||||    
T  49636851 attgcttttcatataattgc-tcgtataactattaaccctag 49636811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 49640243 - 49640104
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||    
T  49640243 tgattgagccatgatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttc 49640145  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||||| | | |||||||||||||||||    
T  49640144 attgcttttcatataattgc-tcggatgactattaaccctag 49640104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 3734005 - 3734144
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||    
T  3734005 tgattgagccatgatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttc 3734103  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||||| | | || ||||||||||||||    
T  3734104 attgcttttcatataattgc-tcggataactattaaccctag 3734144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 14701597 - 14701735
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||||||| || |||||||  ||| |||| |||||||||||||||||||||| |||||||||     
T  14701597 tgattgagccatgatgaacct-ttgtaatatatgatttagtagttaatactctcttatttaataatattattcagtctttattcagaatcacttgtgttt 14701695  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  14701696 attgc-tttcatataattgc-ttgtatgactattaaccctag 14701735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 10385667 - 10385780
Alignment:
Q  124 atatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcagataattgctttgtat 223  Q
    |||||||||| ||||||| |  ||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||| ||| ||    
T  10385667 atatatgaattagtagttgaaactctctttattatcaatattattcagtctttattcagaattatttgtgttcattgcttttcatatgattgc-ttgcat 10385765  T
Q  224 gactattaaccctag 238  Q
    |||||||||||||||    
T  10385766 gactattaaccctag 10385780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 3719923 - 3719785
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||||||| || |||||||  ||| |||| |||||||||||||||||||||| |||||||||     
T  3719923 tgattgagccatgatgaacct-ttgtaatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcagaatcacttgtgttt 3719825  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||  ||||| |||||||| |||||||||||||||||||||    
T  3719824 attg-atttcatataattgc-ttgtatgactattaaccctag 3719785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 10247491 - 10247602
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgtt 195  Q
    |||||| || || ||||||||||||||||||||||||||||||||| |  |||| |||||||| ||| ||||||||||||||||||||||||  ||||||    
T  10247491 ttgattgagtcacgatgaacctattgtaatatatgaatcagtagttaaaactctttttattatcaatattattcagtctttattcagaattatctgtgtt 10247590  T
Q  196 cattgcttttca 207  Q
    |||||| |||||    
T  10247591 cattgcctttca 10247602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 23652969 - 23653078
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatca-gtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgt 194  Q
    |||||| ||||||||||||||||||||||||| |||| || |||||| | | |||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  23652969 ttgattgagccatgatgaacctattgtaatatgtgaaccaagtagttgaac-tctctttattatcaatgttattcaatctttattcagaattatttgtgt 23653067  T
Q  195 tcattgctttt 205  Q
    |||||||||||    
T  23653068 tcattgctttt 23653078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 2541375 - 2541443
Alignment:
Q  23 acaacatagtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttc 91  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  2541375 acaacatggtttcatggttaattttattttccatgctatttatttgtatttctatgtttagctaatttc 2541443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 11560501 - 11560642
Alignment:
Q  96 ttgattaagccatgatgaacctattgtaatatatgaatca-gtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgt 194  Q
    |||||| || ||||||||| |||||||||||| |||  || |||||| |  ||||||||||||| |||||||| || |||||||||| ||||| ||||||    
T  11560501 ttgattgagacatgatgaatctattgtaatatgtgatccaagtagttgaaactctctttattatcaatgttatacaatctttattcaaaattatttgtgt 11560600  T
Q  195 tcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||||||||||   || |||| |||| ||||||||||||||||    
T  11560601 tcattgcttttattatgattg-tttgcatgactattaacccta 11560642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 7395332 - 7395279
Alignment:
Q  37 tggttaattttatttcccatgctatttatttgtatctctatgtctagctaattt 90  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||||||    
T  7395332 tggttaattttatttttcatgctatttatttgtatctctatgtctagttaattt 7395279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 33400712 - 33400621
Alignment:
Q  146 ctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||| |||| ||| |||||| ||||||||||||||||| || |||| ||||||||||| || |||| ||||  ||||||||||||||||    
T  33400712 ctctctttgttatcaatattattcggtctttattcagaattatttatgttaattgcttttcatatgattg-tttgcttgactattaaccctag 33400621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 56089670 - 56089603
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| ||||||||||||||||||  || |||| |||| |||||||||||||||||    
T  56089670 agtctttattcagaattatttgtgttcattgcttttcgtatgattg-tttgcatgactattaaccctag 56089603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 22093533 - 22093481
Alignment:
Q  35 catggttaattttatttcccatgctatttatttgtatctctatgtctagctaa 87  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||| |||||||    
T  22093533 catggttaattttattttccaagatatttatttgtatctctatgtgtagctaa 22093481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 68202 - 68071
Alignment:
Q  103 agccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgct 202  Q
    ||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  68202 agccatgatgaacct-ttgtaatatatgaattagtagttgatactctctttattattaatgttattcagtctttattcagaattacttgtgttcattg-t 68105  T
Q  203 tttcagataattgctttgtatgactattaacccta 237  Q
    ||| | |||||||| || |||||||||||||||||    
T  68104 ttttatataattgc-ttatatgactattaacccta 68071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 53303 - 53172
Alignment:
Q  103 agccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgct 202  Q
    ||||||||||||||| ||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |    
T  53303 agccatgatgaacct-ttgtaatatatgaattagaagttgatactctctttattattaatgttattcagtctttatttagaattatttgtgttcattg-t 53206  T
Q  203 tttcagataattgctttgtatgactattaacccta 237  Q
    ||| | |||||||| ||||||||||||||||||||    
T  53205 ttttatataattgc-ttgtatgactattaacccta 53172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 237
Target Start/End: Original strand, 19727 - 19884
Alignment:
Q  75 tatgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtct 174  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||| ||||||| |||    
T  19727 tatgtctagctaatt-ccct-ttgattgagccatgatgaacctattgtaatatatgaatcagtagttgaaactctctttattatcaatattattcactct 19824  T
Q  175 ttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||| |||||||| ||||||||||  ||||||| || |||| |||| ||||||||||||||||    
T  19825 ttatccagaattatttgtgttcat--cttttcatattattg-tttgcatgactattaacccta 19884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 237
Target Start/End: Original strand, 13277 - 13435
Alignment:
Q  75 tatgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtct 174  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| || |  |||| |||||||| ||| |||||||||||    
T  13277 tatgtctagctaatt-ccct-ttgattgagccatgatgaacctattgtaatatatgaatcagtaattgaaactct-tttattatcaatattattcagtct 13373  T
Q  175 ttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||| || ||||| ||||||| | ||||||||| || |||  |||| ||||||||||||||||    
T  13374 ttatccaaaattatttgtgttaactgcttttcatatgatt-ttttgcatgactattaacccta 13435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 237
Target Start/End: Original strand, 27293 - 27451
Alignment:
Q  75 tatgtctagctaatttccctcttgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtct 174  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| || |  |||| |||||||| ||| |||||||||||    
T  27293 tatgtctagctaatt-ccct-ttgattgagccatgatgaacctattgtaatatatgaatcagtaattgaaactct-tttattatcaatattattcagtct 27389  T
Q  175 ttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||| || ||||| ||||||| | ||||||||| || |||  |||| ||||||||||||||||    
T  27390 ttatccaaaattatttgtgttaactgcttttcatatgatt-ttttgcatgactattaacccta 27451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 27053 - 27192
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| |||||| |||||||  ||||||||||||||| ||||||| || |||||||  ||| |||| |||||||||||||||||||||||| ||||||||    
T  27053 tgattgagccataatgaaccg-ttgtaatatatgaattagtagttgatactctcttatttaataatattattcagtctttattcagaattatttgtgttc 27151  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  27152 attgcttttcagataattgc-tagtatgactattaaccctag 27192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 31492 - 31354
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||||||| || |||||||  ||| |||| |||||||||||||||||||||| |||||||||     
T  31492 tgattgagccatgatgaacct-ttgtaatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcagaatcacttgtgttt 31394  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  31393 attgc-tttcatataattgc-ttgtatgactattaaccctag 31354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 27285 - 27169
Alignment:
Q  119 ttgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcagataattgctt 218  Q
    ||||||||||||| | ||||||| || |||||||  ||| |||| |||||||||||||||||||||| ||||||||| ||||| ||||| |||||||| |    
T  27285 ttgtaatatatgatttagtagttgatactctcttatttaataatattattcagtctttattcagaatcacttgtgtttattgc-tttcatataattgc-t 27188  T
Q  219 tgtatgactattaacccta 237  Q
    |||||||||||||||||||    
T  27187 tgtatgactattaacccta 27169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 29087 - 28949
Alignment:
Q  97 tgattaagccatgatgaacctattgtaatatatgaatcagtagtttatcctctctttattattaatgttattcagtctttattcagaattacttgtgttc 196  Q
    ||||| ||||||||||||||| ||||||||||||| | ||||||| || |||||||  ||| ||||  ||||||||||||||||||||| |||||||||     
T  29087 tgattgagccatgatgaacct-ttgtaatatatgatttagtagttgatactctcttatttaataatagtattcagtctttattcagaatcacttgtgttt 28989  T
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  28988 attgc-tttcatataattgc-ttgtatgactattaaccctag 28949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 2206 - 2287
Alignment:
Q  149 tctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaa 232  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| ||||||    
T  2206 tctttattaataatgttattcagtctttattcagaattagttgtgttcattgc-tttcatataattgc-ttgtatgattattaa 2287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 6032 - 6113
Alignment:
Q  149 tctttattattaatgttattcagtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaa 232  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||||||    
T  6032 tctttattaataatgttattcagtctttattcagaattacttgtgtttattgc-tttcatataattgc-ttgtatgattattaa 6113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 6996 - 7067
Alignment:
Q  166 attcagtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||||||| || |||||||||||||| | || |||| |||| |||||||||||||||||    
T  6996 attcagtctttattcagaattatttatgttcattgctttttatatgattg-tttgcatgactattaaccctag 7067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 13354 - 13420
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaacccta 237  Q
    |||||||||||||||||| |||||||||||||||||   ||||||| |||| ||||||||||||||||    
T  13354 agtctttattcagaattatttgtgttcattgctttttgtataattg-tttgcatgactattaacccta 13420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 227049 - 227086
Alignment:
Q  104 gccatgatgaacctattgtaatatatgaatcagtagtt 141  Q
    |||||||| |||||||||||||||||||||||||||||    
T  227049 gccatgataaacctattgtaatatatgaatcagtagtt 227086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 4021 - 4088
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| |||||||||||| |||||  || ||||  ||| |||||||||||||||||    
T  4021 agtctttattcagaattatttgtgttcattggttttcgtatgattg-gttgcatgactattaaccctag 4088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1048 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1048
Description:

Target: scaffold1048; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 1192 - 1232
Alignment:
Q  197 attgcttttcagataattgctttgtatgactattaaccctag 238  Q
    ||||||||||| |||||||||| |||||||||||||||||||    
T  1192 attgcttttcatataattgctt-gtatgactattaaccctag 1232  T

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Target: scaffold0273 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 20041 - 19974
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| ||||| | | ||||||||  || |||| |||||||||||| |||||||||    
T  20041 agtctttattcagaattatttgtgcttaatgcttttcttatgattg-tttgtatgactactaaccctag 19974  T

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Target: scaffold0083 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 52881 - 52948
Alignment:
Q  170 agtctttattcagaattacttgtgttcattgcttttcagataattgctttgtatgactattaaccctag 238  Q
    |||||||||||||||||| |||||||||  |||||||  || |||| |||| ||||||||||| |||||    
T  52881 agtctttattcagaattatttgtgttcaaagcttttcgtatgattg-tttgcatgactattaatcctag 52948  T

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