View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4282_high_5 (Length: 427)

Name: NF4282_high_5
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4282_high_5
NF4282_high_5
[»] chr1 (1 HSPs)
chr1 (23-410)||(29637802-29638196)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 410
Target Start/End: Original strand, 29637802 - 29638196
Alignment:
Q  23 gcgataatatttttaatcaaattatgttcataagacttgttctcccttatgctaaattcctgatttcccaccttgatatcattttatttcnnnnnnnnnn 122  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||              
T  29637802 gcgatagtatttttaatcaaattatgttcataagacttgttctcccttatgctaaattcctgatt-cccaccttgatatcattttatttcaaaaacaaaa 29637900  T
Q  123 nntacctgtatgnnnnnnnnnnnnatgagacacacatatgtggtgctggtacgaggtactttaattcctttgaataaacggtgttatatttgcctgcact 222  Q
      ||||||||||            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29637901 aatacctgtatgttttttatttttatgaaacacacatatgtggtgctggtacgaggtactttaattcctttgaataaacggtgttatatttgcctgcact 29638000  T
Q  223 tttgttgcaagggaaaacatttatttattatattccctnnnnnnngttatatattatatatag--------nnnnnnnnaacaataatgttgtgtatagt 314  Q
    |||||||||||||||||||||||| |||||||||||||       ||||||||||||||||||                |||||||||||||||||||||    
T  29638001 tttgttgcaagggaaaacatttatatattatattccctaaaaaaagttatatattatatatagttttttttttttttttaacaataatgttgtgtatagt 29638100  T
Q  315 ttatttatttattacgacacaaagcaaaactcaaaaggaatacgttgcctaccagtcgatgacattcttcttttgttggtgggatgggctatatat 410  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29638101 ttatttatttattacgacaaaaggcaaaactcaaaaggaatacgttgcctaccagtcgatgacattcttcttttgttggtgggatgggctatatat 29638196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University