View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4282_high_6 (Length: 410)
Name: NF4282_high_6
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282_high_6 |
 | |
|
| [»] scaffold0632 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 96 - 395
Target Start/End: Complemental strand, 36486218 - 36485919
Alignment:
| Q |
96 |
caacacatatcatctacaaactctcttcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgta |
195 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36486218 |
caacacatatcatctacaaactct--tcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgta |
36486121 |
T |
|
| Q |
196 |
agttgtagtgaaattaagctcattaattaataaatgaaaaaataccttgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtgg |
295 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36486120 |
agttgtagtgaaattaagctcatgaattaataaatgaaaaaagaccttgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtgg |
36486021 |
T |
|
| Q |
296 |
aggtaagtggccgtgatgatggaggttggaacacatccaaatctactgttatatttccaattcca--cacaaactttttcaccaacaattcccgacatta |
393 |
Q |
| |
|
||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36486020 |
aggtaagcggctgtgatgatagaggctggaacacatccaaatctactgttatatttccaattccacacacaaactttttcaccaacaattcccgacatta |
36485921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 96 - 395
Target Start/End: Complemental strand, 28539570 - 28539271
Alignment:
| Q |
96 |
caacacatatcatctacaaactctcttcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgta |
195 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28539570 |
caacacatatcatctacaaactct--tcactttcttgttctttttattctagtccattttcatgaagatatatactatataactgatcaaacgttttgta |
28539473 |
T |
|
| Q |
196 |
agttgtagtgaaattaagctcattaattaataaatgaaaaaataccttgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtgg |
295 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28539472 |
agttgtagtgaaattaagctcatgaattaataaatgaaaaaagatcttgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtactgg |
28539373 |
T |
|
| Q |
296 |
aggtaagtggccgtgatgatggaggttggaacacatccaaatctactgttatatttccaattcca--cacaaactttttcaccaacaattcccgacatta |
393 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28539372 |
aggtaagcggccgtgatgatggaggctggaatacatccaaatctactgttatatttccaattccacacacaaactttttcaccaacaattcccgacatta |
28539273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 96 - 395
Target Start/End: Original strand, 31600164 - 31600463
Alignment:
| Q |
96 |
caacacatatcatctacaaactctcttcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgta |
195 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31600164 |
caacacatatcatctacaaactct--tcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttctgta |
31600261 |
T |
|
| Q |
196 |
agttgtagtgaaattaagctcattaattaataaatgaaaaaataccttgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtgg |
295 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31600262 |
agttgtagtgaaattaagctcatgaattaataaatgaaaaaagaccttgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtgg |
31600361 |
T |
|
| Q |
296 |
aggtaagtggccgtgatgatggaggttggaacacatccaaatctactgttatatttccaattc--cacacaaactttttcaccaacaattcccgacatta |
393 |
Q |
| |
|
||||||| | | |||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31600362 |
aggtaagcgtctgtgatgattgaggctggaacacatccaaatctactgttatatttccaattccacacacaaactttttcaccaacaattcccgacatta |
31600461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 144 - 390
Target Start/End: Complemental strand, 957139 - 956891
Alignment:
| Q |
144 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcattaattaataaatgaaaaaatacctt |
243 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||||||| ||||| |
|
|
| T |
957139 |
ctagtccattttcatgaagatataaactagataactgatcaaattttttgtaagttgtagtgaaattaagctcatgaat----aaacgaaaaaagacctt |
957044 |
T |
|
| Q |
244 |
gaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtggaggtaagtggccgtgatgatggaggttggaacacatccaaatctactg |
343 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
957043 |
gaaacaggagtgaagaagagcctcaagttggagatggtggctgatgtagcggaggtaagcggccgtgatgatggaggctgtagcacatccaaatctactg |
956944 |
T |
|
| Q |
344 |
t----tatatttccaattc--cacacaaactttttcaccaacaattcccgaca |
390 |
Q |
| |
|
| | |||||||||||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
956943 |
tagtatttatttccaattccacacacaaactttttcaccatcaattcctgaca |
956891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 144 - 297
Target Start/End: Complemental strand, 2672 - 2518
Alignment:
| Q |
144 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcattaattaataaatgaa-aaaatacct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |
|
|
| T |
2672 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcatgaattaataaatgaaaaaaagacct |
2573 |
T |
|
| Q |
243 |
tgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtggag |
297 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
2572 |
tgaaacatgagtgaagaagatcctcaagttggaaatggtggctgatgtagtggag |
2518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University