View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282_low_1 (Length: 625)
Name: NF4282_low_1
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Complemental strand, 48650909 - 48650345
Alignment:
| Q |
18 |
aaaatacatacataaaatcaataaacaaatcttcaaggttacatacaaaagttcggacatgtttcttgtaaaaataaatatttacggatgagattaattt |
117 |
Q |
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| T |
48650909 |
aaaatacatacataaaatcaataaacaaatcttcaaggttacatacaaaagttcggacatgtttcttgtaaaaataaatatttacggatgagattaattt |
48650810 |
T |
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| Q |
118 |
ataaaagggtaatattaacctgtagtaggagtgatggatggggcataatgatattgatgagtttggtggaagatttgaggtggagggacacccattgcca |
217 |
Q |
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| T |
48650809 |
ataaaagggtaatattaacctgtagtaggagtgatggatggggcataatgatattgatgagtttggtggaagatttgaggtggagggacacccattgcca |
48650710 |
T |
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| Q |
218 |
tagcctcggttgatctgtagacaggagcagggtggtggtacatgattggcatcgcacccacaatagcctgcctcggcggcgggtacacgtagcccccaca |
317 |
Q |
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| T |
48650709 |
tagcctcggttgatctgtagacaggagcagggtggtggtacatgattggcatcgcacccacaatagcctgcctcggcggcgggtacacgtagcccccacc |
48650610 |
T |
|
| Q |
318 |
cattccatagctcagtttctgctgcatttgtccaacaattttttcaaat-aaaataaaaatattatttcttgttattgaattgggcatgcaatacgtaat |
416 |
Q |
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| T |
48650609 |
cattccatagctcagtttctgctgcattcgtccaacaattttttcaaataaaaataaaaatattatttcttgttattgaattgggcatgcaatacgtaat |
48650510 |
T |
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| Q |
417 |
aaccacctgacctacctgattgtaattgtaattcatatgatctgttgcaatgtaggtgggcgtgtacctgaatgaatgagagaaagagattcattaaatc |
516 |
Q |
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| T |
48650509 |
aaccaccagacctacctgattgtaattgtaattcatatgatctgttgcaatgtaggtgggcgtgtacctgaatgaatgagagaaagagattcactaaatc |
48650410 |
T |
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| Q |
517 |
acattatatgcctcaactcaacgcctattttttagaacaaaaagcaagaataaaatataatatat |
581 |
Q |
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| T |
48650409 |
acattatatgccaaaactcaacgcctattttttagaacaaaaagcaagaataaaatataatatat |
48650345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 562 - 614
Target Start/End: Complemental strand, 48650269 - 48650217
Alignment:
| Q |
562 |
aagaataaaatataatatatatacccgtagaaaggaatggcgtgatgatgatg |
614 |
Q |
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| T |
48650269 |
aagaataaaatataatatatatacccgtagaaaggaagggcatgatgatgatg |
48650217 |
T |
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