View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4282_low_13 (Length: 342)

Name: NF4282_low_13
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4282_low_13
NF4282_low_13
[»] chr4 (17 HSPs)
chr4 (23-332)||(22575337-22575634)
chr4 (59-123)||(32922825-32922889)
chr4 (62-130)||(33335280-33335348)
chr4 (53-88)||(27359540-27359575)
chr4 (56-130)||(43154575-43154649)
chr4 (53-146)||(45219021-45219115)
chr4 (53-121)||(34236750-34236818)
chr4 (53-123)||(10097944-10098014)
chr4 (60-109)||(31377585-31377633)
chr4 (53-102)||(39985078-39985127)
chr4 (60-97)||(43771870-43771907)
chr4 (53-130)||(50783560-50783637)
chr4 (54-122)||(12596531-12596599)
chr4 (62-110)||(21823105-21823153)
chr4 (53-113)||(32141384-32141444)
chr4 (77-121)||(34929512-34929556)
chr4 (62-110)||(45670462-45670510)
[»] chr3 (18 HSPs)
chr3 (54-125)||(50888867-50888938)
chr3 (53-130)||(9247106-9247183)
chr3 (57-130)||(15664487-15664560)
chr3 (65-131)||(23629273-23629339)
chr3 (57-130)||(15568508-15568581)
chr3 (57-123)||(4541331-4541397)
chr3 (60-126)||(53199778-53199844)
chr3 (53-130)||(40241995-40242072)
chr3 (53-130)||(48650325-48650402)
chr3 (53-109)||(52525478-52525534)
chr3 (53-108)||(7613193-7613248)
chr3 (53-120)||(23631312-23631379)
chr3 (79-130)||(30403239-30403290)
chr3 (55-105)||(7753108-7753158)
chr3 (65-113)||(5047747-5047796)
chr3 (60-97)||(27213986-27214023)
chr3 (77-130)||(34908575-34908628)
chr3 (60-100)||(29373172-29373212)
[»] chr7 (14 HSPs)
chr7 (53-130)||(28147476-28147554)
chr7 (53-157)||(1397845-1397950)
chr7 (53-119)||(30965766-30965832)
chr7 (56-110)||(33878195-33878249)
chr7 (56-110)||(42161540-42161594)
chr7 (53-126)||(23803380-23803453)
chr7 (60-152)||(27219875-27219967)
chr7 (55-145)||(29648541-29648632)
chr7 (88-123)||(34533076-34533111)
chr7 (55-102)||(42646432-42646479)
chr7 (56-102)||(35316477-35316523)
chr7 (60-129)||(29414664-29414733)
chr7 (53-118)||(42753269-42753334)
chr7 (78-130)||(40332892-40332944)
[»] chr1 (16 HSPs)
chr1 (54-118)||(32815199-32815263)
chr1 (65-123)||(11453378-11453436)
chr1 (54-108)||(10553829-10553883)
chr1 (53-123)||(12047239-12047308)
chr1 (53-123)||(36901606-36901676)
chr1 (60-125)||(33135109-33135174)
chr1 (62-113)||(1035204-1035255)
chr1 (52-123)||(41834786-41834857)
chr1 (77-122)||(32784839-32784884)
chr1 (72-123)||(5807400-5807452)
chr1 (60-152)||(38902164-38902256)
chr1 (65-109)||(40287571-40287615)
chr1 (60-122)||(17922316-17922378)
chr1 (60-117)||(11818191-11818248)
chr1 (54-119)||(41619254-41619319)
chr1 (64-152)||(50564213-50564301)
[»] chr5 (13 HSPs)
chr5 (53-173)||(29045305-29045426)
chr5 (56-122)||(13138528-13138594)
chr5 (54-127)||(5264423-5264496)
chr5 (53-129)||(39351043-39351119)
chr5 (63-123)||(3135624-3135684)
chr5 (56-119)||(1299936-1299999)
chr5 (60-130)||(27674802-27674872)
chr5 (75-152)||(42430468-42430546)
chr5 (77-153)||(2054068-2054145)
chr5 (53-92)||(35556444-35556483)
chr5 (53-126)||(14640971-14641042)
chr5 (65-119)||(16054400-16054453)
chr5 (85-148)||(6633025-6633089)
[»] chr8 (11 HSPs)
chr8 (53-128)||(2072187-2072262)
chr8 (60-130)||(13177772-13177842)
chr8 (75-131)||(34505216-34505272)
chr8 (53-172)||(41909205-41909325)
chr8 (63-112)||(32094373-32094422)
chr8 (53-111)||(1090048-1090104)
chr8 (60-130)||(7621502-7621572)
chr8 (65-110)||(10921722-10921767)
chr8 (65-130)||(24186013-24186077)
chr8 (60-128)||(515139-515207)
chr8 (53-97)||(32967726-32967770)
[»] chr2 (14 HSPs)
chr2 (53-130)||(14812292-14812369)
chr2 (60-125)||(7920223-7920288)
chr2 (53-97)||(12956884-12956928)
chr2 (56-128)||(28489143-28489215)
chr2 (61-117)||(37199982-37200038)
chr2 (57-124)||(7670182-7670249)
chr2 (83-130)||(28538031-28538078)
chr2 (53-154)||(31608186-31608287)
chr2 (60-175)||(1758430-1758546)
chr2 (56-119)||(18375493-18375556)
chr2 (53-123)||(13490864-13490934)
chr2 (83-129)||(37528727-37528773)
chr2 (53-130)||(37331809-37331886)
chr2 (49-121)||(10727076-10727147)
[»] scaffold0223 (1 HSPs)
scaffold0223 (56-150)||(22132-22227)
[»] chr6 (4 HSPs)
chr6 (60-152)||(7984599-7984692)
chr6 (53-97)||(40070-40114)
chr6 (61-123)||(4057384-4057446)
chr6 (55-130)||(25211671-25211746)
[»] scaffold0172 (1 HSPs)
scaffold0172 (53-120)||(19457-19524)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 332
Target Start/End: Original strand, 22575337 - 22575634
Alignment:
Q  23 gtaatatttaacgaacccattacgagaaataattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatt 122  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22575337 gtaatatttaacgaacccacaacgagaaataattttatcttaaaaatacaagtcaaacacatgtaaaagtcataattacataattttcaatataaaaatt 22575436  T
Q  123 attactttatatggttaaacaatgtcctaaaaacagtcgttaatattttctatgttaacatgacacaaatctgatgtgtggattcttgtaattctacgct 222  Q
    ||||||||||||||||||||||           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22575437 attactttatatggttaaacaa-----------cagtcgttaatattttct-tgttaacatgacacaaatctgatgtgtggattcttgtaattctacgct 22575524  T
Q  223 ttattgaaatttcttttcaatcattcatgttgttgttcttgttttattatttgttgctttctttctcgttcctcgtcttgcgtttcaagctattgtcttt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22575525 ttattgaaatttcttttcaatcattcatgttgttgttcttgttttattatttgttgctttctttctcgttcctcgtcttccgtttcaagctattgtcttt 22575624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 32922825 - 32922889
Alignment:
Q  59 atcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 123  Q
    ||||| |||||| |||||||| |||||||||||| |||| || |||||||| |||||||||||||    
T  32922825 atctttaaaatataaatcaaatacatgtaaaagtgataactatataattttcaatataaaaatta 32922889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 33335280 - 33335348
Alignment:
Q  62 ttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    |||||||||||| ||||| |||||||||  |||||| |||| |||||| ||||||||||||| ||||||    
T  33335280 ttaaaaatacaagtcaaatacatgtaaatatcataactacacaattttcaatataaaaattactacttt 33335348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 27359540 - 27359575
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaa 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  27359540 aattttatcttaaaaatacaaatcaaacacatgtaa 27359575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 43154649 - 43154575
Alignment:
Q  56 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    ||||| |||||| || || ||| |||||||||||||| |||| || | ||||| |||||||||||||||||||||    
T  43154649 tttattttaaaagtagaagtcagacacatgtaaaagtaataaatatacaatttctaatataaaaattattacttt 43154575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 45219021 - 45219115
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatg 146  Q
    |||||| |||| |||||| || | ||||| ||||||||||||||| |||| |||||  ||||||||||||| ||| |||| ||| ||||||||||    
T  45219021 aattttgtctttaaaatataagtaaaacatatgtaaaagtcataagtacacaatttcaaatataaaaattactacttttagatgcttaaacaatg 45219115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 34236750 - 34236818
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaat 121  Q
    |||||| |||||||||||||| ||||| |||||||||| |||||| |||| |||||  ||| |||||||    
T  34236750 aattttgtcttaaaaatacaattcaaaaacatgtaaaaatcataactacacaatttgcaatgtaaaaat 34236818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 10098014 - 10097944
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 123  Q
    |||||| |||| |||||| ||  |||| ||||||||||||||||| || | |||||| |||||||||||||    
T  10098014 aattttgtcttgaaaatataaggcaaatacatgtaaaagtcataactatacaattttcaatataaaaatta 10097944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 31377585 - 31377633
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttt 109  Q
    |||| ||||||||| |||||||||||| ||||||||||||||| ||||||    
T  31377585 tcttgaaaatacaagtcaaacacatgt-aaagtcataattacacaatttt 31377633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 39985127 - 39985078
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattaca 102  Q
    |||||||||||||||  | |||||||| |||||||||||| |||||||||    
T  39985127 aattttatcttaaaagcataaatcaaatacatgtaaaagtaataattaca 39985078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 43771870 - 43771907
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataa 97  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  43771870 tcttaaaaatacaagtcaaacacatgttaaagtcataa 43771907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 50783637 - 50783560
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    ||||||||||| |||| |  | |||||||||||||||||| ||||||||| || |||  |||||||| ||| ||||||    
T  50783637 aattttatcttgaaaacattagtcaaacacatgtaaaagtaataattacacaagtttctatataaaagttactacttt 50783560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 12596599 - 12596531
Alignment:
Q  54 attttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatt 122  Q
    ||||| |||||||||||||||||||| | | ||||||| ||||| || |||||||| ||| | ||||||    
T  12596599 attttgtcttaaaaatacaaatcaaataaacgtaaaagacataaatatataattttcaatgtcaaaatt 12596531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 21823105 - 21823153
Alignment:
Q  62 ttaaaaatacaaatcaaacacatgtaaaagtcataattacataattttt 110  Q
    |||||| ||||| |||||||||||||||| ||||||| | |||||||||    
T  21823105 ttaaaactacaagtcaaacacatgtaaaaatcataataatataattttt 21823153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 32141384 - 32141444
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaat 113  Q
    ||||||||||| ||||||||| |||||||||| ||||| ||| || || | ||||||||||    
T  32141384 aattttatcttgaaaatacaagtcaaacacatctaaaaatcacaactatacaatttttaat 32141444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 34929512 - 34929556
Alignment:
Q  77 aaacacatgtaaaagtcataattacataatttttaatataaaaat 121  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||    
T  34929512 aaacacatataaaagtcataaatacacaattttcaatataaaaat 34929556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 45670462 - 45670510
Alignment:
Q  62 ttaaaaatacaaatcaaacacatgtaaaagtcataattacataattttt 110  Q
    |||||||||||||||||||||   |||||||  ||||||||||||||||    
T  45670462 ttaaaaatacaaatcaaacacgcataaaagttgtaattacataattttt 45670510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 50888867 - 50888938
Alignment:
Q  54 attttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatt 125  Q
    ||||||||||| |||||||| |||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  50888867 attttatcttagaaatacaagtcaaacacatgtaaaagttataactacacaatttttaatataaaaattatt 50888938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 9247183 - 9247106
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    ||||||||||| ||||||||||| ||||||   |||||||||||| |||||||||||| |||||||||||| ||||||    
T  9247183 aattttatcttgaaaatacaaatgaaacacgcataaaagtcataactacataattttttatataaaaattactacttt 9247106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 15664487 - 15664560
Alignment:
Q  57 ttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    ||||||||||||||||| | |||||||||||||| |||||| || |||| ||||||||||||| ||||||||||    
T  15664487 ttatcttaaaaatacaagttaaacacatgtaaaaatcataactatataacttttaatataaaagttattacttt 15664560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 23629339 - 23629273
Alignment:
Q  65 aaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttta 131  Q
    |||||||||||||||||||||||||||||||||||| | |||||| ||| ||||| ||| |||||||    
T  23629339 aaaatacaaatcaaacacatgtaaaagtcataattatacaattttcaatgtaaaagttactacttta 23629273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 15568508 - 15568581
Alignment:
Q  57 ttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    ||||||||||||| ||| |||||||||| |||||  ||||| || | |||||||||||||||| ||||||||||    
T  15568508 ttatcttaaaaatgcaagtcaaacacatataaaaagcataactatacaatttttaatataaaagttattacttt 15568581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 4541397 - 4541331
Alignment:
Q  57 ttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 123  Q
    ||||||| ||||||||| ||||| | |||||||||| ||||||||| |||| | |||||||||||||    
T  4541397 ttatcttgaaaatacaagtcaaagatatgtaaaagttataattacaaaattctcaatataaaaatta 4541331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 53199844 - 53199778
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatta 126  Q
    ||||||||||| ||||||||||||||| |||||||||| || | |||||| ||| ||||| ||||||    
T  53199844 tcttaaaaataaaaatcaaacacatgttaaagtcataactaaacaattttcaatgtaaaagttatta 53199778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 40242072 - 40241995
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    ||||| ||||||||||||||| | || |||||||||||| ||||| |||| ||||||  || ||||||||| ||||||    
T  40242072 aatttcatcttaaaaatacaagttaagcacatgtaaaaggcataactacacaattttccatgtaaaaattactacttt 40241995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 48650402 - 48650325
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    |||||| || |||||||||||   ||||||| |||||||| |||| |||| |||||||||||||||| ||| ||||||    
T  48650402 aattttgtcctaaaaatacaagataaacacaggtaaaagttataactacacaatttttaatataaaagttactacttt 48650325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 52525534 - 52525478
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttt 109  Q
    |||||| | ||||||||| || ||||| |||||||||||||||||||| ||||||||    
T  52525534 aattttgttttaaaaatataagtcaaatacatgtaaaagtcataattatataatttt 52525478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 7613193 - 7613248
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataattt 108  Q
    |||||| ||||||||||| || |||| || |||||||| |||||||||||||||||    
T  7613193 aattttgtcttaaaaatataagtcaatcatatgtaaaaatcataattacataattt 7613248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 23631312 - 23631379
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaa 120  Q
    ||||||||||| ||||||||| | |||||| |||||||||||||| |||| ||| ||| || ||||||    
T  23631312 aattttatcttgaaaatacaagttaaacacgtgtaaaagtcataactacaaaatctttcatgtaaaaa 23631379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 30403290 - 30403239
Alignment:
Q  79 acacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    |||||||||||||||||||||| | ||||| |||| ||||| ||||||||||    
T  30403290 acacatgtaaaagtcataattatacaatttctaatgtaaaagttattacttt 30403239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 7753158 - 7753108
Alignment:
Q  55 ttttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataa 105  Q
    ||||||||| |||| | ||||||||||||| ||||||| ||||||||||||    
T  7753158 ttttatcttgaaaacataaatcaaacacatataaaagtaataattacataa 7753108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 5047747 - 5047796
Alignment:
Q  65 aaaatacaaatcaaacacatgt-aaaagtcataattacataatttttaat 113  Q
    |||||| ||||||||||||||| ||||||||||| |||| ||||||||||    
T  5047747 aaaatataaatcaaacacatgtaaaaagtcataactacacaatttttaat 5047796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 27214023 - 27213986
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataa 97  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  27214023 tcttaaaaatacaagtcaaacatatgtaaaagtcataa 27213986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 34908628 - 34908575
Alignment:
Q  77 aaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    |||||||||||||||| |||| |||| ||||||| ||||||| |||| ||||||    
T  34908628 aaacacatgtaaaagtaataagtacacaattttttatataaatattactacttt 34908575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 29373212 - 29373172
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataatta 100  Q
    |||||||||||||| |||||| ||| |||||||||||||||    
T  29373212 tcttaaaaatacaagtcaaacgcatataaaagtcataatta 29373172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 28147554 - 28147476
Alignment:
Q  53 aattttatctta-aaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    |||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  28147554 aattttatcttagaaaatacaaatcatatacatgtaaaagtcataattacgtaatttttaatgtaaaaattactacttt 28147476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 1397845 - 1397950
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtccta 151  Q
    |||||||||||  || |||||||||||| ||| ||||| |||||| |||| |||||||||||||||||||| ||| |||| ||| ||||||||| |||||    
T  1397845 aattttatcttggaactacaaatcaaacgcatttaaaaatcataactacacaatttttaatataaaaattactacttttaaatgcttaaacaatctccta 1397944  T
Q  152 aaaaca 157  Q
    | ||||    
T  1397945 ataaca 1397950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 30965832 - 30965766
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaa 119  Q
    ||||||||||| |||||| |||||||||||| ||  ||||||||| |||| ||||||||||||||||    
T  30965832 aattttatcttgaaaatataaatcaaacacacgttgaagtcataaatacacaatttttaatataaaa 30965766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 33878249 - 33878195
Alignment:
Q  56 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataattttt 110  Q
    |||||| ||||||||||||||||||| ||||||||||||||| |||| |||||||    
T  33878249 tttatcctaaaaatacaaatcaaacatatgtaaaagtcataactacacaattttt 33878195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 42161594 - 42161540
Alignment:
Q  56 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataattttt 110  Q
    |||||||||||||||||||||||||| || | |||||||||| ||||||||||||    
T  42161594 tttatcttaaaaatacaaatcaaacatatatgaaagtcataactacataattttt 42161540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 23803453 - 23803380
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatta 126  Q
    ||||||||||||||| || || |||||||||| ||||||| ||||||| |||| |||| ||| ||||| |||||    
T  23803453 aattttatcttaaaattataagtcaaacacatttaaaagtaataattatataaatttttatacaaaaaatatta 23803380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 27219875 - 27219967
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattactttat--atggttaaacaatgtcctaa 152  Q
    |||| ||||||||||| |||||||  ||||| |||||| |||| |||||||||| ||||||||| |||||| |  ||| ||||||||| ||||||    
T  27219875 tcttgaaaatacaaattaaacaca--taaaaatcataactacacaatttttaatgtaaaaattactactttttgaatgtttaaacaatatcctaa 27219967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 29648632 - 29648541
Alignment:
Q  55 ttttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaat 145  Q
    |||| ||||||||||| || | |||||||||||||| |||||| ||||||||||| |||  |||| ||| ||| |||  |||||||||||||    
T  29648632 ttttgtcttaaaaatataagttaaacacatgtaaaaatcataactacataattttcaatgcaaaagttactacatttgaatggttaaacaat 29648541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 34533076 - 34533111
Alignment:
Q  88 aaagtcataattacataatttttaatataaaaatta 123  Q
    ||||||||||||| ||||||||||||||||||||||    
T  34533076 aaagtcataattatataatttttaatataaaaatta 34533111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 42646479 - 42646432
Alignment:
Q  55 ttttatcttaaaaatacaaatcaaacacatgtaaaagtcataattaca 102  Q
    ||||||||||||||||||||| ||| | |||| |||||||||||||||    
T  42646479 ttttatcttaaaaatacaaataaaatatatgtcaaagtcataattaca 42646432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 35316477 - 35316523
Alignment:
Q  56 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattaca 102  Q
    ||||||||||||||||||||| |||| || |||||||||||| ||||    
T  35316477 tttatcttaaaaatacaaatctaacatatttaaaagtcataaataca 35316523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 29414664 - 29414733
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattactt 129  Q
    |||| ||||||||| ||||| ||||||||||||||||  || | |||||| ||| ||||||||| |||||    
T  29414664 tcttgaaaatacaagtcaaatacatgtaaaagtcatacctatacaattttcaatgtaaaaattactactt 29414733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 42753334 - 42753269
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaa 118  Q
    ||||||||||| ||||||||| ||||| ||| |||||| |||||| |  |||||||| ||||||||    
T  42753334 aattttatcttgaaaatacaactcaaatacaagtaaaattcataactgtataattttcaatataaa 42753269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 40332892 - 40332944
Alignment:
Q  78 aacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    ||||||| ||||| | ||||||| ||||||||| |||||||||||| ||||||    
T  40332892 aacacatataaaaattataattatataatttttcatataaaaattactacttt 40332944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 32815263 - 32815199
Alignment:
Q  54 attttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaa 118  Q
    |||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||| ||||    
T  32815263 attttatcttaaaaatacaagtcaaacatatgtaaaagtaataattacataatttttaatgtaaa 32815199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 11453436 - 11453378
Alignment:
Q  65 aaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 123  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| || |||||||||    
T  11453436 aaaatacaaatcaaacgcatgtaaaagtcataactacataatttttcatgtaaaaatta 11453378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 10553829 - 10553883
Alignment:
Q  54 attttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataattt 108  Q
    |||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||    
T  10553829 attttatcttaaaaatacaaattaaatacatgttaaagtcatagttacataattt 10553883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 12047308 - 12047239
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 123  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||| |||| ||||||| || |||||||||    
T  12047308 aattttatcttaaga-tacaagtcaaacacatgtaaaagtcataactacacaatttttcatgtaaaaatta 12047239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 36901676 - 36901606
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 123  Q
    |||||| || |||||||||| |||||||| |||||||| | |||| ||||||||||||||| |||||||||    
T  36901676 aattttgtcataaaaatacagatcaaacaaatgtaaaaattataactacataatttttaatgtaaaaatta 36901606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 33135174 - 33135109
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatt 125  Q
    ||||||||||| ||||||||| |||||||||||  ||| || |||||||||||||||||| |||||    
T  33135174 tcttaaaaataaaaatcaaacgcatgtaaaagtattaactatataatttttaatataaaatttatt 33135109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 1035255 - 1035204
Alignment:
Q  62 ttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaat 113  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||| ||||    
T  1035255 ttaaaaatacaaatcaaacacatgtcgaagtcataactacataatttataat 1035204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 41834857 - 41834786
Alignment:
Q  52 taattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 123  Q
    ||||| |||||||||||||||| ||||||| || ||||||| ||||||||| |||||| ||  |||||||||    
T  41834857 taattgtatcttaaaaatacaagtcaaacatatataaaagtaataattacacaattttcaacgtaaaaatta 41834786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 32784884 - 32784839
Alignment:
Q  77 aaacacatgtaaaagtcataattacataatttttaatataaaaatt 122  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||    
T  32784884 aaacacatgtaaaaatcataactacataatttttaatgtaaaaatt 32784839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 5807400 - 5807452
Alignment:
Q  72 aaatcaaacacatgtaaaagtcataattacata-atttttaatataaaaatta 123  Q
    ||||||||||||||||||||| |||||||||||  ||||| ||||||||||||    
T  5807400 aaatcaaacacatgtaaaagttataattacatattttttttatataaaaatta 5807452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 38902256 - 38902164
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaa--attattactttatatggttaaacaatgtcctaa 152  Q
    |||| ||||| ||| ||||||| || ||||||||||||||||| |||||| ||| |||||  ||||||  |||| ||| ||||||||||||||||    
T  38902256 tcttgaaaattcaagtcaaacatatataaaagtcataattacacaattttcaatgtaaaagtattatt--tttagatgcttaaacaatgtcctaa 38902164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 40287571 - 40287615
Alignment:
Q  65 aaaatacaaatcaaacacatgtaaaagtcataattacataatttt 109  Q
    |||||||||||||||||||||||||| | |||| |||||||||||    
T  40287571 aaaatacaaatcaaacacatgtaaaaatgataactacataatttt 40287615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 17922378 - 17922316
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatt 122  Q
    ||||| ||||| || |||||||| ||| |||||||||||||||| |||||  |||||||||||    
T  17922378 tcttagaaatataagtcaaacacgtgtcaaagtcataattacattattttctatataaaaatt 17922316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 11818191 - 11818248
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataa 117  Q
    |||| ||||||||| ||||| ||||||||||||||||| || | |||||| |||||||    
T  11818191 tcttgaaaatacaagtcaaaaacatgtaaaagtcataactatacaattttcaatataa 11818248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 41619319 - 41619254
Alignment:
Q  54 attttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaa 119  Q
    |||||| ||| |||||| |||| ||||| || |||||| |||||||| |||||||||||| |||||    
T  41619319 attttaactttaaaatataaattaaacaaatataaaagccataattatataatttttaatgtaaaa 41619254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 50564213 - 50564301
Alignment:
Q  64 aaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattactttatatggttaaacaatgtcctaa 152  Q
    |||||||||| |||||||  | |||||||||||| || |||||||||||| ||||| ||| || ||   ||| ||||||||||| ||||    
T  50564213 aaaaatacaagtcaaacatctctaaaagtcataagtaaataatttttaatgtaaaagttactatttcgaatgcttaaacaatgttctaa 50564301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 29045426 - 29045305
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtccta 151  Q
    |||| ||| ||||||||| ||||||||||| ||| |||||||||| || ||||||||||||  |||||||| ||| |||| |||||||||||||||| |     
T  29045426 aattatatattaaaaatataaatcaaacacttgttaaagtcataactatataatttttaatgcaaaaattactacttttagatggttaaacaatgtcttt 29045327  T
Q  152 aaaacagtcgttaatattttct 173  Q
    |||| | | ||||| |||||||    
T  29045326 aaaaaacttgttaacattttct 29045305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 13138594 - 13138528
Alignment:
Q  56 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatt 122  Q
    |||||||| ||||||||| |||||||||| |||||||||||||||||||||||  ||| ||||||||    
T  13138594 tttatcttgaaaatacaagtcaaacacatataaaagtcataattacataatttccaatgtaaaaatt 13138528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 5264496 - 5264423
Alignment:
Q  54 attttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac 127  Q
    ||||||| |||||||||||||| ||| | |||||||||| ||||||| ||||||||| || |||||||||||||    
T  5264496 attttattttaaaaatacaaattaaatatatgtaaaagttataattagataattttttatgtaaaaattattac 5264423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 39351119 - 39351043
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattactt 129  Q
    ||||||||| | ||||||||| |||||||||| ||||||||||||||| | ||||| |||| ||||||||| |||||    
T  39351119 aattttatcatgaaaatacaagtcaaacacatctaaaagtcataattatacaatttctaatgtaaaaattactactt 39351043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 3135684 - 3135624
Alignment:
Q  63 taaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 123  Q
    ||||||||||| ||||||| || |||||||||||| |||| |||||||||| |||||||||    
T  3135684 taaaaatacaagtcaaacatatataaaagtcataactacacaatttttaatgtaaaaatta 3135624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 1299936 - 1299999
Alignment:
Q  56 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaa 119  Q
    ||||| |||||||||||| |||||||||||||||| ||| |||||| ||| ||| |||||||||    
T  1299936 tttattttaaaaatacaagtcaaacacatgtaaaaatcacaattacgtaaatttcaatataaaa 1299999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 27674802 - 27674872
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    |||| ||||||||| |||||||||||| || || |||| |||||||||||||||  | |||||||||||||    
T  27674802 tcttgaaaatacaagtcaaacacatgtgaatgttataactacataatttttaatgcataaattattacttt 27674872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 42430546 - 42430468
Alignment:
Q  75 tcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtcctaa 152  Q
    |||||||||||| ||||||||||||||| | |||  ||| ||||||||||||| |||  ||| ||||||||||||||||    
T  42430546 tcaaacacatgtcaaagtcataattacaaattttgaaatgtaaaaattattacttttgaatgattaaacaatgtcctaa 42430468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 2054068 - 2054145
Alignment:
Q  77 aaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtcctaaa 153  Q
    ||||||||||||||||||||| | || |||||| ||| ||||||| | ||| |||||||| |||||||||| ||||||    
T  2054068 aaacacatgtaaaagtcataactgcacaattttcaatgtaaaaatgactacttttatatgtttaaacaatgccctaaa 2054145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 35556444 - 35556483
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagt 92  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  35556444 aattttctcttaaaaatataaatcaaacacatgtaaaagt 35556483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 14640971 - 14641042
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatta 126  Q
    ||||||||||| ||||||  ||||||||| || ||||| |||||||||||| |||||| || | ||||||||||    
T  14640971 aattttatcttgaaaata--aatcaaacatatataaaaatcataattacattattttttatgtgaaaattatta 14641042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 16054453 - 16054400
Alignment:
Q  65 aaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaa 119  Q
    ||||||||| |||||||||| |||||||||||| ||||||||||| ||| |||||    
T  16054453 aaaatacaagtcaaacacatataaaagtcataa-tacataattttcaatgtaaaa 16054400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 6633089 - 6633025
Alignment:
Q  85 gtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtc 148  Q
    ||||||||||||| || | || ||||||||||||||||| ||| |||| ||| ||||||||||||    
T  6633089 gtaaaagtcataactatacaaattttaatataaaaattactacttttaaatgtttaaacaatgtc 6633025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 2072262 - 2072187
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattact 128  Q
    |||||| |||| |||||||||||||||||||| ||||||| |||| |||| |||||||||||||||| ||| ||||    
T  2072262 aattttctcttgaaaatacaaatcaaacacatataaaagttataactacacaatttttaatataaaagttactact 2072187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 13177842 - 13177772
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||||||  ||||||||| ||| ||||||    
T  13177842 tcttgaaaatacaagtcaaacacatgtaaaagtcataactacataatttccaatataaaagttactacttt 13177772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 34505216 - 34505272
Alignment:
Q  75 tcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttta 131  Q
    |||||||||||||||||||||||||| | |||||| ||||| ||| |||||||||||    
T  34505216 tcaaacacatgtaaaagtcataattatacaattttcaatatcaaagttattacttta 34505272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 172
Target Start/End: Original strand, 41909205 - 41909325
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatta-ctttatatggttaaacaatgtccta 151  Q
    |||| |||||||||||||||| | ||||| || |||||||||||| || | |||||||||| ||||||| |||| ||||  ||| ||||| |||||| ||    
T  41909205 aattctatcttaaaaatacaagttaaacatatctaaaagtcataactatacaatttttaatgtaaaaatgattatctttggatgcttaaataatgtcgta 41909304  T
Q  152 aaaacagtcgttaatattttc 172  Q
    ||| || | ||||| ||||||    
T  41909305 aaagcatttgttaacattttc 41909325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 32094373 - 32094422
Alignment:
Q  63 taaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaa 112  Q
    |||||||| || ||||| |||||||||||||||||||| |||||||||||    
T  32094373 taaaaatataagtcaaatacatgtaaaagtcataattatataatttttaa 32094422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 1090048 - 1090104
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataattttta 111  Q
    |||||| |||| ||||||||| ||||||||||  ||||||||||| |||||||||||||    
T  1090048 aattttgtcttgaaaatacaagtcaaacacat--aaaagtcataactacataattttta 1090104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 7621502 - 7621572
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    |||||| |||| || |||||||||||||||||||||||||| | ||| || ||| ||||| ||| ||||||    
T  7621502 tcttaagaatataagtcaaacacatgtaaaagtcataattataaaatgttcaatgtaaaagttactacttt 7621572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 10921722 - 10921767
Alignment:
Q  65 aaaatacaaatcaaacacatgtaaaagtcataattacataattttt 110  Q
    ||||||||| |||||||||||||||| |||||| |||| |||||||    
T  10921722 aaaatacaagtcaaacacatgtaaaaatcataactacacaattttt 10921767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 24186077 - 24186013
Alignment:
Q  65 aaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    ||||||||| |||||| |||||||||||||||| || ||||| |||||| |||||  |||||||||    
T  24186077 aaaatacaagtcaaac-catgtaaaagtcataactatataatatttaatgtaaaagatattacttt 24186013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 515207 - 515139
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattact 128  Q
    |||| ||||||||| ||||| | ||||||||||||||| |||| |||||  ||| ||||||||| ||||    
T  515207 tcttgaaaatacaagtcaaatatatgtaaaagtcataactacacaatttccaatttaaaaattactact 515139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 32967726 - 32967770
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataa 97  Q
    ||||||||||| ||||||||| |||||| ||||||||| ||||||    
T  32967726 aattttatcttcaaaatacaagtcaaactcatgtaaaaatcataa 32967770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 14812369 - 14812292
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    ||||||||||| ||||||||| ||||||| |||||||||| ||||||||| |||||| ||| ||||| ||| ||||||    
T  14812369 aattttatcttgaaaatacaagtcaaacatatgtaaaagttataattacacaattttcaatgtaaaagttaatacttt 14812292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 7920223 - 7920288
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattatt 125  Q
    |||| |||||||||||||||||||||||||| |||||| |||| |||||| ||| || ||||||||    
T  7920223 tcttgaaaatacaaatcaaacacatgtaaaaatcataactacacaattttcaatgtagaaattatt 7920288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 12956928 - 12956884
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataa 97  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  12956928 aattttatcttaaaaatacaagtcaaacacatgtcaaagtcataa 12956884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 28489215 - 28489143
Alignment:
Q  56 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattact 128  Q
    ||||| || ||||||||| | ||||| | ||||| |||||||||||||||||||| | |||||||||||||||    
T  28489215 tttattttgaaaatacaagttaaacataagtaaacgtcataattacataattttttaaataaaaattattact 28489143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 37199982 - 37200038
Alignment:
Q  61 cttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataa 117  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||| ||| |||||||    
T  37199982 cttaaaaatataaatcaaacacatttaaaaatcataattacataactttcaatataa 37200038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 7670182 - 7670249
Alignment:
Q  57 ttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattat 124  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||| | |||||| ||| |||| |||||    
T  7670182 ttatcttaaaaatacaagtcaaacatatggaaaagtcataattatacaattttcaatgtaaatattat 7670249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 28538031 - 28538078
Alignment:
Q  83 atgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  28538031 atgtaaaagtcataattacataatttttattataaaagttattccttt 28538078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 31608186 - 31608287
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattactttatatggttaaacaatgtcctaa 152  Q
    |||||| |||| ||||| |||  | ||||||| ||||| |||||| || | |||||||||||||||||||| || ||  |||| |||||||||| |||||    
T  31608186 aattttgtcttgaaaatgcaagactaacacatataaaaatcataactatacaatttttaatataaaaattactatttgttatgcttaaacaatgccctaa 31608285  T
Q  153 aa 154  Q
    ||    
T  31608286 aa 31608287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 1758546 - 1758430
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtcctaaaaacag 158  Q
    ||||||||||| || ||||||||||||| ||||||||  |||| ||||||| ||  |||| ||| ||| |||| ||| |||||||||||| ||| ||||     
T  1758546 tcttaaaaatataagtcaaacacatgtagaagtcatatctacacaattttttatgcaaaagttactacttttagatgcttaaacaatgtcttaagaacac 1758447  T
Q  159 tcgttaatattttctat 175  Q
    |  |||| |||||||||    
T  1758446 ttattaacattttctat 1758430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 18375556 - 18375493
Alignment:
Q  56 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaa 119  Q
    ||||||||||||||| || |||| || |  ||||||| ||||||||||||||||| ||||||||    
T  18375556 tttatcttaaaaatataagtcaagcatacataaaagtaataattacataattttttatataaaa 18375493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 13490864 - 13490934
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 123  Q
    |||||| |||| |||||| ||  ||||||||||||||| |||||| || | |||||| |||||||||||||    
T  13490864 aattttgtcttgaaaatataaggcaaacacatgtaaaaatcataactatacaattttcaatataaaaatta 13490934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 37528727 - 37528773
Alignment:
Q  83 atgtaaaagtcataattacataatttttaatataaaaattattactt 129  Q
    |||||||||  ||||||||||||||||| ||||||||||||| ||||    
T  37528727 atgtaaaaggaataattacataattttttatataaaaattatcactt 37528773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 37331809 - 37331886
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    |||||||||||||||||| || ||||| | || | ||| ||||||||||| |||| | |||| |||||||| ||||||    
T  37331809 aattttatcttaaaaatataagtcaaatatatattaaaatcataattacacaattgtcaatacaaaaattactacttt 37331886  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 10727147 - 10727076
Alignment:
Q  49 aaataattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaat 121  Q
    ||||||||||||||| ||||| ||| ||||| | |||||||||| ||||||| | ||||||| || |||||||    
T  10727147 aaataattttatcttgaaaattcaagtcaaatatatgtaaaagttataattata-aattttttatgtaaaaat 10727076  T

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Target: scaffold0223 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 22227 - 22132
Alignment:
Q  56 tttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtcct 150  Q
    ||||||||||||||| || ||||| |||| ||||||| |  | ||||||||||||||| ||||||||||||| |||| ||| ||||||||| ||||    
T  22227 tttatcttaaaaatataagtcaaatacatataaaagttacgactacataatttttaatgtaaaaattattacttttaaatgtttaaacaatatcct 22132  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 7984599 - 7984692
Alignment:
Q  60 tcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattac-tttatatggttaaacaatgtcctaa 152  Q
    |||| ||||||||| ||||||||||||||||||||||| |||| |||||| ||| ||||| ||  ||| |||  ||| ||||||||||||||||    
T  7984599 tcttgaaaatacaagtcaaacacatgtaaaagtcataactacaaaattttcaatgtaaaatttgctacttttggatgcttaaacaatgtcctaa 7984692  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 40070 - 40114
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataa 97  Q
    |||||| |||| |||||||||||||||||||||||||||||||||    
T  40070 aattttgtcttgaaaatacaaatcaaacacatgtaaaagtcataa 40114  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 4057446 - 4057384
Alignment:
Q  61 cttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaatta 123  Q
    |||||||||| || ||||| |||||| ||||||||||||  |||| |||||||||||||||||    
T  4057446 cttaaaaatataagtcaaatacatgttaaagtcataattctataaattttaatataaaaatta 4057384  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 25211746 - 25211671
Alignment:
Q  55 ttttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaattattacttt 130  Q
    |||||||||||||||| || |  ||||||||||||| | ||||||||| || |||| |||| ||||||| ||||||    
T  25211746 ttttatcttaaaaatataagttgaacacatgtaaaaataataattacacaaatttttatattaaaattactacttt 25211671  T

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Target: scaffold0172 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 19457 - 19524
Alignment:
Q  53 aattttatcttaaaaatacaaatcaaacacatgtaaaagtcataattacataatttttaatataaaaa 120  Q
    ||||||||||| |||| | || |||||||||||||||||| ||||||||| || |||| ||| |||||    
T  19457 aattttatcttgaaaacataagtcaaacacatgtaaaagtaataattacacaagtttttatacaaaaa 19524  T

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