View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282_low_14 (Length: 332)
Name: NF4282_low_14
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 14788688 - 14788387
Alignment:
| Q |
13 |
catcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaactatcactagcaagaggcaatgatgtttccattttaaaatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788688 |
catcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaactatcactagcaagaggcaatgatgtttccattttaaaatg |
14788589 |
T |
|
| Q |
113 |
tttattgcaacagatgtgttgtgtgaattaatataaaaaacgtgtataccaataaggacaaagtttatttgaagcaacaatgaaagaataatattagaaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14788588 |
tttattgcaacagatgtgttgtgtgaattaatataaaaaacgtgtataccaataaggacaaagtttatttgaagcaacaatgaaaaaataatattagaaa |
14788489 |
T |
|
| Q |
213 |
atagactcatgctaacaagtgcttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgtaaggtgtaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788488 |
atagactcatgctaacaagtgcttgttatgaaggtaaaaaaggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgtaaggtgtaaa |
14788389 |
T |
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| Q |
313 |
at |
314 |
Q |
| |
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|| |
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|
| T |
14788388 |
at |
14788387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 17543859 - 17544057
Alignment:
| Q |
13 |
catcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaactatcactagcaagaggcaatgatgtttccattttaaaatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17543859 |
catcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaactatcactagcaagaggcaatgatgtttccattttaaaatg |
17543958 |
T |
|
| Q |
113 |
tttattgcaacagatgtgttgtgtgaattaatataaaaaacgtgtataccaataaggacaaagtttatttgaagcaacaatgaaagaataatattagaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17543959 |
tttattgcaacagatgtgttgtgtgaattaatat-aaaaatgtgtataccaataaggacaaagtttatttgaagcaacaatgaaagaataatattagaaa |
17544057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 204 - 314
Target Start/End: Original strand, 17544475 - 17544585
Alignment:
| Q |
204 |
tattagaaaatagactcatgctaacaagtgcttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgta |
303 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17544475 |
tattagaacatagactcatgctaacaagtgcttgttatgaaggtaaaaaaggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgta |
17544574 |
T |
|
| Q |
304 |
aggtgtaaaat |
314 |
Q |
| |
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||||||||||| |
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| T |
17544575 |
aggtgtaaaat |
17544585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 9045229 - 9045163
Alignment:
| Q |
234 |
cttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagtt |
300 |
Q |
| |
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||||||| |||||||||||| ||||||||||||| ||| |||||||||| || ||||||||||||| |
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| T |
9045229 |
cttgttaagaaggtaaaaatagaaataagtgataaatttaaagtaaaaaaagttaatttctaaagtt |
9045163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 35507145 - 35507203
Alignment:
| Q |
242 |
gaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagtt |
300 |
Q |
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|||| ||||||||||||||||||||| ||| | |||||||| ||||||||||| |||| |
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| T |
35507145 |
gaagctaaaaatggaaataagtgataaattcaaggtaaaaaaagtcaatttctagagtt |
35507203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 47458 - 47554
Alignment:
| Q |
219 |
tcatgctaacaagtg-cttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgtaaggtgtaaaatg |
315 |
Q |
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||||||||||||||| ||||||| |||| ||||||||||| |||||||| ||| | |||||||| ||||| || ||||||| ||||||| ||||| |
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| T |
47458 |
tcatgctaacaagtgacttgttaagaagttaaaaatggaattaagtgatgaattcaaggtaaaaaa-gtcaaattttaaagtttaaaggtgttaaatg |
47554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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