View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282_low_15 (Length: 330)
Name: NF4282_low_15
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 182 - 318
Target Start/End: Complemental strand, 32141204 - 32141072
Alignment:
| Q |
182 |
aacaggtgattgtatagccttgccaaaattgcaaatggtggaggattaatttgcatgtctataaataattagttagttagttatctgttgttagctcaat |
281 |
Q |
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| T |
32141204 |
aacaggtgattgtatagccttgccaaaattgcatatggtggaggactaatttgcatgtctataaata----gttagttagttatctgttgttagctcaat |
32141109 |
T |
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| Q |
282 |
aagctatctacaaatcatagcatttgtatttcatctc |
318 |
Q |
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| T |
32141108 |
aagctatctacaaatcatagcatttgtatttcatctc |
32141072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 32141370 - 32141252
Alignment:
| Q |
16 |
caccaaacaccgttaatgttgccaacaaatcttttgacaatgcaactacaaaaagtgaaacaattggagatcataattggtttcaggacattaagttgat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32141370 |
caccaaacaccgttaatgttgccaacaaatcttttgacaatgcaactacaaaaagtgaaacaattggagatcataatttgtttcaggacattaagttgat |
32141271 |
T |
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| Q |
116 |
gatcttctatagactgatt |
134 |
Q |
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| T |
32141270 |
gatcttctatggactgatt |
32141252 |
T |
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