View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282_low_19 (Length: 277)
Name: NF4282_low_19
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 12924860 - 12924982
Alignment:
| Q |
1 |
cagcaacataatcaatgtctac---taattaaatgtagcaaaagaaattttaaataaaatgttaaaaccattaatttttacagcctagtaggttaaaatg |
97 |
Q |
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| T |
12924860 |
cagcaacatgatcaatgtctactactaattaaatgtagcaaaagaaattataaataaaatgttaaaaccattaatttttacagcctagtaggttaaaatg |
12924959 |
T |
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| Q |
98 |
tggccaactaattggaggcacaa |
120 |
Q |
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| T |
12924960 |
tggccaactaattggaggcacaa |
12924982 |
T |
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Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 12925034 - 12925120
Alignment:
| Q |
172 |
ccaccactaccacttgttgcttattagtagaacatgtggttttcgtttgaaccttcaggatctctgatttttcctgcatcaatcaat |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12925034 |
ccaccactaccacttgttgcttattagtagaacatgtggttttcgtttgaaccttcaggatctctgatttttcctgcatcaatcaat |
12925120 |
T |
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