View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282_low_22 (Length: 257)
Name: NF4282_low_22
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 30888999 - 30889240
Alignment:
| Q |
1 |
ttgtaacaatattctccggcacagtttcagatatgttcggaaggcgtccgatgttaataacatcctcaatcatgtttttcttaagtggtttagttatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30888999 |
ttgtaacaatattctccggcacagtttcagatatgttcggaaggcgtccgatgttaataacatcctcaatcatgtttttcttaagtggtttagttatgtt |
30889098 |
T |
|
| Q |
101 |
atgggctccaaatgttcctgttgtactgttttcaaggctattgaatggaattgcaattgcattagccatcagtctaactcctctctacatatctgagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30889099 |
atgggctccaaatgttcctgttgtactgttttcaaggctattgaatggaattgcaattgcattagccatcagtctaactcctctctacatatctgagata |
30889198 |
T |
|
| Q |
201 |
gcaccacctgatataagaggcttgctcaatactcttcctatg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
30889199 |
gcaccacctgatataagaggcttgctcaatactcttcctatg |
30889240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 9953218 - 9953177
Alignment:
| Q |
179 |
tcctctctacatatctgagatagcaccacctgatataagagg |
220 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9953218 |
tcctctttacatatctgagatagcaccacctgatataagagg |
9953177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 19696046 - 19696005
Alignment:
| Q |
179 |
tcctctctacatatctgagatagcaccacctgatataagagg |
220 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19696046 |
tcctctttacatatctgagatagcaccacctgatataagagg |
19696005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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