View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282_low_4 (Length: 573)
Name: NF4282_low_4
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 38174604 - 38175163
Alignment:
| Q |
1 |
tagaaatactcatctcaaccaaaattgtggcagctgagtgttatagaaatctgactgaattttcatcagagtagcgcatttttgcatttaatcaacctga |
100 |
Q |
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| T |
38174604 |
tagaaatactcatcttaaccaaaattgtggcagctgagtgttatagaaatctgactgaattttcatcagagtagcgcatttttgcatttaatcaacctga |
38174703 |
T |
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| Q |
101 |
tgaatatgtggcagctgcatcttcatttttgtcatgtgaaatacgaaacatggaaacttgttattgattcgatgatgaacaaattagctaatcggaaagg |
200 |
Q |
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| T |
38174704 |
tgaatatgtggcagctgcatcttcatttttgtcatgtgaaatacgaaatatggaaactttttattgattcgatgatgaacaaattagctaataggaaagg |
38174803 |
T |
|
| Q |
201 |
taaacatttgtactccttcatgtcacatcaaacacaattttatagcttcattaaataattaatgcatataatcatatttatagttcaattacattactta |
300 |
Q |
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| T |
38174804 |
taaacatttgtactccttcatgtcacatcaaacacaattttgtagcttcattaaataattaatgtatataatcatatttatagttcgattacattactta |
38174903 |
T |
|
| Q |
301 |
ttcaataaacttaaaaactactttnnnnnnnnnnnnnnnnnnnnataaatgtaatcaaatgaagtatatat---tggtggagtattgatgaattaagttc |
397 |
Q |
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| T |
38174904 |
ttcaataaacttaaaaactatatt-----tttttttttttacttataaatgtaaccagatgaaatatatattggtggtggagtattgatgaattaaattc |
38174998 |
T |
|
| Q |
398 |
aatcaattctctcactatatattttcttt----gttttcttttcattctatacatagcccctaaaaggttataagtaagatgatatctattcaaagataa |
493 |
Q |
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| T |
38174999 |
aatcaattctctcactatatttttttttttttgtttttcttttcattctatacaaagcccctaaaaggttataactaagatgatatctatttaaagataa |
38175098 |
T |
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| Q |
494 |
tttttgtgggggaggtgggtgggatagaggtaaataagatttgttgggttagcttagatcatatt |
558 |
Q |
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| T |
38175099 |
tttttgtgggggaggtgggtgggatagaggtaaataagatttgttgggttagcttagatcatatt |
38175163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 31836450 - 31836520
Alignment:
| Q |
247 |
ttcattaaataattaatgcatataatcatatttatagttcaattacattacttattcaataaacttaaaaa |
317 |
Q |
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| T |
31836450 |
ttcattgaataattaatgtatttagtcatatttatagaccaaatacattaattattcaatgaacctaaaaa |
31836520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 38133432 - 38133491
Alignment:
| Q |
250 |
attaaataattaatgcatataatcatatttatagttcaattacattacttattcaataaa |
309 |
Q |
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| T |
38133432 |
attaaataattaatgtatctgatcatatttataggtcaaatatattaattattcaataaa |
38133491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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