View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4282_low_5 (Length: 531)
Name: NF4282_low_5
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 42126591 - 42126079
Alignment:
| Q |
1 |
ctagtttcaattggtgatgaagctgtcatctctgaaggggttttggttcaaagccatgaggtaaaaaatggaattcttagtctccatcctataaggattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126591 |
ctagtttcaattggtgatgaagctgtcatctctgaaggggttttggttcaaagccatgaggtaaaaaatggaattcttagtctccatcctataaggattg |
42126492 |
T |
|
| Q |
101 |
gccgaaattcttcgattggaccttatgatgttattcaaaaaggaagtattatcaaagaaggagctgagatacaaccactacaaaaagttgaaggaggcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126491 |
gccgaaattcttcgattggaccttatgctgttattcaaaaaggaagtattatcaaagaaggagctgagatacaaccactacaaaaagttgaaggaggcca |
42126392 |
T |
|
| Q |
201 |
acatgttcttaaaactgcaaagcttaataatgttaaagaggttagttccaagcagcaaaacattttatattccaataccatgcaaaacttttaaatttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126391 |
acatgttcttaaaactgcaaagcttaataatgttaaagaggttagttccaagcaccaaaacattttatattccaataccatgcaaaacttttaaatttgt |
42126292 |
T |
|
| Q |
301 |
tttccggtaattagatgcaagaatccatgctttattgctcaaaacatcattccatatgatagcagttgtgttatttgaacatgaagttacaaacatcgca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42126291 |
tttccggtaattagatgcaagaatccatgctttattgctcaaaacatcattccatatgatagcagttgtgttatttgaacatgaaattacaaacatcgca |
42126192 |
T |
|
| Q |
401 |
tgtgacactgtgtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaaccaaagtcgacatcaaaattt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126191 |
tgtgacactgtgtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaaccaaagtcgacatcaaaattt |
42126092 |
T |
|
| Q |
501 |
tgagtcaaaaatc |
513 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42126091 |
tgagtcaaaaatc |
42126079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 24929880 - 24929735
Alignment:
| Q |
7 |
tcaattggtgatgaagctgtcatctctgaaggggttttggttcaaagccatgaggtaaaaaatggaattcttagtctccatcctataaggattggccgaa |
106 |
Q |
| |
|
||||| || |||||||||||| | | ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| || | |||||| | |
|
|
| T |
24929880 |
tcaatcggagatgaagctgtcgttgcagaaggtgttttggttcaaagccatgaggtaaagaatggaattctaagtctccatcccattaagattggaaaat |
24929781 |
T |
|
| Q |
107 |
attcttcgattggaccttatgatgttattcaaaaaggaagtattat |
152 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||||| |||||| |||| |
|
|
| T |
24929780 |
gttcttctattggaccttatgctgttgttcaaaacggaagtgttat |
24929735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 484
Target Start/End: Original strand, 33844149 - 33844221
Alignment:
| Q |
412 |
gtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaaccaaa |
484 |
Q |
| |
|
|||||||| ||||||||| ||||| | |||| |||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
33844149 |
gtttatctctatctctctcttactatttatctcctacaacttaaatgcatttcaaaaatacacaaaaaccaaa |
33844221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 485
Target Start/End: Complemental strand, 36646827 - 36646749
Alignment:
| Q |
409 |
tgtgtttatctatatctctcttttactttatatcctctacaacttac--agacatttcaaaaatacacaaaaaccaaag |
485 |
Q |
| |
|
||||||||||| ||||||||||||||||| || | | |||||||||| ||| ||| ||||||||||||||| ||||| |
|
|
| T |
36646827 |
tgtgtttatctctatctctcttttactttttaccttatacaacttacttagatttttaaaaaatacacaaaaatcaaag |
36646749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 12119911 - 12119845
Alignment:
| Q |
413 |
tttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaa |
479 |
Q |
| |
|
||||||||||||||||| ||||||| |||| |||| ||||| | |||||||||||||||||||| |
|
|
| T |
12119911 |
tttatctatatctctctcttactttttatcttctattggttacacatatttcaaaaatacacaaaaa |
12119845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 475
Target Start/End: Complemental strand, 20809151 - 20809087
Alignment:
| Q |
411 |
tgtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacaca |
475 |
Q |
| |
|
|||| |||| ||||||||| ||||||| |||| | |||||| |||| |||||| ||||||||||| |
|
|
| T |
20809151 |
tgttcatctctatctctctcttactttttatcttttacaacatacacacatttaaaaaatacaca |
20809087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University