View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4282_low_7 (Length: 460)

Name: NF4282_low_7
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4282_low_7
NF4282_low_7
[»] chr6 (5 HSPs)
chr6 (11-441)||(24480523-24480947)
chr6 (21-364)||(24470533-24470878)
chr6 (381-441)||(24470297-24470357)
chr6 (27-71)||(31720051-31720095)
chr6 (21-86)||(14758010-14758075)
[»] chr8 (5 HSPs)
chr8 (21-86)||(17687642-17687707)
chr8 (21-82)||(24634979-24635040)
chr8 (30-71)||(15598424-15598465)
chr8 (25-71)||(1210180-1210226)
chr8 (21-71)||(17879296-17879346)
[»] chr3 (8 HSPs)
chr3 (291-364)||(54480547-54480620)
chr3 (21-71)||(1463956-1464006)
chr3 (21-71)||(17769432-17769482)
chr3 (21-71)||(19070733-19070783)
chr3 (21-71)||(19658414-19658464)
chr3 (25-71)||(16305587-16305633)
chr3 (30-71)||(7921141-7921182)
chr3 (25-70)||(18122054-18122099)
[»] chr5 (3 HSPs)
chr5 (21-69)||(19903294-19903342)
chr5 (25-67)||(13545949-13545991)
chr5 (21-69)||(6037768-6037816)
[»] chr1 (8 HSPs)
chr1 (21-71)||(10153702-10153752)
chr1 (21-86)||(25399038-25399103)
chr1 (27-71)||(23917503-23917547)
chr1 (21-67)||(11105075-11105121)
chr1 (27-67)||(14968977-14969017)
chr1 (25-86)||(2819657-2819717)
chr1 (34-71)||(21684424-21684461)
chr1 (27-67)||(23486311-23486351)
[»] chr7 (8 HSPs)
chr7 (21-86)||(1878687-1878752)
chr7 (29-71)||(9762358-9762400)
chr7 (29-67)||(10254770-10254808)
chr7 (21-67)||(12598351-12598397)
chr7 (25-71)||(18362009-18362055)
chr7 (21-86)||(12222864-12222927)
chr7 (25-74)||(15467586-15467635)
chr7 (25-86)||(15871508-15871568)
[»] chr4 (6 HSPs)
chr4 (21-86)||(23087353-23087418)
chr4 (20-86)||(32491215-32491280)
chr4 (29-70)||(24619321-24619362)
chr4 (34-71)||(13693476-13693513)
chr4 (21-65)||(8860341-8860385)
chr4 (27-67)||(32468922-32468962)
[»] chr2 (5 HSPs)
chr2 (21-86)||(27939649-27939714)
chr2 (21-69)||(26704301-26704349)
chr2 (21-68)||(25564316-25564363)
chr2 (29-71)||(40202777-40202819)
chr2 (21-69)||(24109791-24109839)
[»] scaffold0340 (1 HSPs)
scaffold0340 (27-71)||(17636-17680)
[»] scaffold0859 (1 HSPs)
scaffold0859 (25-71)||(2656-2702)
[»] scaffold0043 (1 HSPs)
scaffold0043 (25-71)||(2216-2262)
[»] scaffold0010 (1 HSPs)
scaffold0010 (21-69)||(135831-135879)


Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 24480947 - 24480523
Alignment:
Q  11 cacagatcccactctaagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatgcacataatgaaaaacaagggtataggta 110  Q
    ||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||| |||||||    
T  24480947 cacagatcagactctaagacttaagaatttctaagatatgatggtttataagaaattctaagtgggttgacgcacataatgaaaaacaagggcataggta 24480848  T
Q  111 catggacagtgagggataaaggcacgatcatcaaccctcaattctggacaaaacaatcacatttgttttgtaggtgataagcaagtatcatgtttgaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||         
T  24480847 catggacagtgagggataaaggcacgatcatcaaccctcaattcttgacaaaacaatcacatttgttttgtaggtgataagcaagtatcatgttt----- 24480753  T
Q  211 caaatttttgctgctaaaatagctactctcatgaataatgtcattgtatgtggatctggagaagtatttgggtagtaaattatgaatgacgtgcttttgg 310  Q
       |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24480752 ---atttttgctgctaaaatagcaactctcatgaataatgtcattgtatgtggatctggagaagtatttgggtagtaaattatgaatgacgtgcttttgg 24480656  T
Q  311 tttatagcagcattctcgaaattgtaattatgctattataaaactttatgtc--ttgnnnnnnngaatggataaagtaacagtaataactaagaaggaat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||       ||||| ||||||||| ||||||||||||||||||||    
T  24480655 tttatagcagcattctcgaaattgtaattatgctattataaaactttatgtcttttgtttttttgaatgcataaagtaaaagtaataactaagaaggaat 24480556  T
Q  409 gtatgattatttgataagagtgtatgggaggtt 441  Q
    || || |||||||||||||||||||||||||||    
T  24480555 gtctgtttatttgataagagtgtatgggaggtt 24480523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 364
Target Start/End: Complemental strand, 24470878 - 24470533
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatgcacataatgaaaaacaagggtataggtacatggacagt 120  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||| |||||||||||||||||    
T  24470878 actctaagacttatgaatttctaagatatgacggtttataagaaattctaagtgtgttgatgcacagaat-aaaaacaggggcataggtacatggacagt 24470780  T
Q  121 gagggataaaggcacgatcatcaaccctcaattctggacaaaacaatcacatttgttttgtaggtgataagcaagtatcatgtttgaaaacaaatttttg 220  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  24470779 gagggataaaggcacgatcatcaaccctcaattctcgacaaaacaatgacatttgttttgtaggtgataagcaagtaccatgtttgataacaaatttttg 24470680  T
Q  221 ctgctaaaatagctactctcatgaata---atgtcattgtatgtggatctggagaagtatttgggtagtaaattatgaatgacgtgcttttggtttatag 317  Q
    ||||||||||||||||| |||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24470679 ctgctaaaatagctactgtcatgaataaagatgtcattgtatgtgggtctggagaagtatttgggtagtaaattatgaatgacgtgcttttggtttatag 24470580  T
Q  318 cagcattctcgaaattgtaattatgctattataaaactttatgtctt 364  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  24470579 cagcattctcgaaattgtaattatgctattataagactttatgtctt 24470533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 24470357 - 24470297
Alignment:
Q  381 aaagtaacagtaataactaagaaggaatgtatgattatttgataagagtgtatgggaggtt 441  Q
    |||||||| ||| ||| ||||||||||||| || |||||||||| ||||||| ||||||||    
T  24470357 aaagtaacggtattaagtaagaaggaatgtctgtttatttgatatgagtgtaggggaggtt 24470297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 31720095 - 31720051
Alignment:
Q  27 agacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    |||||||||||||||||||||||||   |||||||||||||||||    
T  31720095 agacttaagaatttctaagatatgaaaatttataagaaattctaa 31720051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 14758010 - 14758075
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatgcaca 86  Q
    ||||||||||| |||||||| |||||||| |   || |||||||||||||| ||| ||||||||||    
T  14758010 actctaagactaaagaatttataagatataaaaattgataagaaattctaagtgttttgatgcaca 14758075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 17687642 - 17687707
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatgcaca 86  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||    
T  17687642 actctaagacttaagaatttctaagatatgaaagtttataagaaattctaagtgttttgatgcaca 17687707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 24634979 - 24635040
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatg 82  Q
    |||||||||||||||||||||||||||||||  |||||||||||||| ||| ||| ||||||    
T  24634979 actctaagacttaagaatttctaagatatgaaagtttataagaaattataagtgttttgatg 24635040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 15598424 - 15598465
Alignment:
Q  30 cttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  15598424 cttaagaatttctaagatatgaaagtttataagaaattctaa 15598465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 1210226 - 1210180
Alignment:
Q  25 taagacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    |||||||| ||||||||||| ||||||  ||||||||||||||||||    
T  1210226 taagactttagaatttctaatatatgaaagtttataagaaattctaa 1210180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 17879296 - 17879346
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    ||||||||||||| ||||||||||| | |||  ||||||||||||||||||    
T  17879296 actctaagacttatgaatttctaaggtgtgaaagtttataagaaattctaa 17879346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 54480620 - 54480547
Alignment:
Q  291 tatgaatgacgtgcttttggtttatagcagcattctcgaaattgtaattatgctattataaaactttatgtctt 364  Q
    |||||||||| |||||||||||||||||||||||||| |||||| ||| ||||| ||| ||||  |||||||||    
T  54480620 tatgaatgacatgcttttggtttatagcagcattctcaaaattgaaatcatgcttttacaaaaagttatgtctt 54480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 1463956 - 1464006
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    |||||||||||||||||||| ||||||||||  ||| ||||||||||||||    
T  1463956 actctaagacttaagaatttgtaagatatgaaagttgataagaaattctaa 1464006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 17769482 - 17769432
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    ||||||||| ||||| |||||||||||||||  ||||||||||||||||||    
T  17769482 actctaagagttaagcatttctaagatatgaaagtttataagaaattctaa 17769432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 19070783 - 19070733
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    ||||||||| ||||| |||||||||||||||  ||||||||||||||||||    
T  19070783 actctaagagttaagcatttctaagatatgaaagtttataagaaattctaa 19070733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 19658464 - 19658414
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    |||||||||||||| ||||||||||||||||  ||| ||||||||||||||    
T  19658464 actctaagacttaataatttctaagatatgaaagttgataagaaattctaa 19658414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 16305633 - 16305587
Alignment:
Q  25 taagacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    |||||||  ||||||||||||||||||  ||||||||||||||||||    
T  16305633 taagactctagaatttctaagatatgaaagtttataagaaattctaa 16305587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 7921182 - 7921141
Alignment:
Q  30 cttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    |||| |||||||||||||||||  ||||||||||||||||||    
T  7921182 cttatgaatttctaagatatgaaagtttataagaaattctaa 7921141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 18122099 - 18122054
Alignment:
Q  25 taagacttaagaatttctaagatatgacggtttataagaaattcta 70  Q
    |||||||| ||||||||||||||||||  ||| |||||||||||||    
T  18122099 taagactttagaatttctaagatatgaaagttgataagaaattcta 18122054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 19903294 - 19903342
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattct 69  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  19903294 actctaagacttaagaatttctaagatatgaaagtttataagaaattct 19903342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 13545991 - 13545949
Alignment:
Q  25 taagacttaagaatttctaagatatgacggtttataagaaatt 67  Q
    ||||||| ||||||||||||||||||| |||| ||||||||||    
T  13545991 taagactcaagaatttctaagatatgaaggttgataagaaatt 13545949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 6037768 - 6037816
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattct 69  Q
    ||||||||||||| |||||| ||| ||||||  ||||||||||||||||    
T  6037768 actctaagacttatgaatttttaacatatgaaagtttataagaaattct 6037816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 10153702 - 10153752
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  10153702 actctaagactaaagaatttctaagatatgaaagtttataagaaattctaa 10153752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 25399038 - 25399103
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatgcaca 86  Q
    |||||| ||||||||||||||||||||||||  |||||||||||||| ||| | | ||||||||||    
T  25399038 actctatgacttaagaatttctaagatatgaaagtttataagaaattttaagtattttgatgcaca 25399103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 23917503 - 23917547
Alignment:
Q  27 agacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  23917503 agacttaagaatttctaagatatgatagtttataagaaattctaa 23917547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 11105075 - 11105121
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaatt 67  Q
    |||||| ||||||||||||||||||||||||  ||||||||||||||    
T  11105075 actctaggacttaagaatttctaagatatgaaagtttataagaaatt 11105121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 14969017 - 14968977
Alignment:
Q  27 agacttaagaatttctaagatatgacggtttataagaaatt 67  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  14969017 agacttaagaatttctaagatatgaaagtttataagaaatt 14968977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 2819717 - 2819657
Alignment:
Q  25 taagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatgcaca 86  Q
    |||||||| ||||||||||||||||||  |||  ||||||||||||| ||| ||||||||||    
T  2819717 taagactttagaatttctaagatatgaaagttgttaagaaattctaagtgt-ttgatgcaca 2819657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 21684461 - 21684424
Alignment:
Q  34 agaatttctaagatatgacggtttataagaaattctaa 71  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  21684461 agaatttctaagatatgaaagtttataagaaattctaa 21684424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 23486311 - 23486351
Alignment:
Q  27 agacttaagaatttctaagatatgacggtttataagaaatt 67  Q
    |||||| ||||||||||||||||||  ||||||||||||||    
T  23486311 agacttcagaatttctaagatatgaaagtttataagaaatt 23486351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 1878752 - 1878687
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatgcaca 86  Q
    |||||||||||||||||||| ||||||||||  ||| ||||||||| |||| ||| ||||||||||    
T  1878752 actctaagacttaagaatttttaagatatgaaagttgataagaaatgctaagtgttttgatgcaca 1878687  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 9762358 - 9762400
Alignment:
Q  29 acttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    ||||||||||||||||||| |||  ||||||||||||||||||    
T  9762358 acttaagaatttctaagatttgaaagtttataagaaattctaa 9762400  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 10254808 - 10254770
Alignment:
Q  29 acttaagaatttctaagatatgacggtttataagaaatt 67  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  10254808 acttaagaatttctaagatatgaaagtttataagaaatt 10254770  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 12598397 - 12598351
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaatt 67  Q
    ||||||||||||| ||||||||||||| ||| |||| ||||||||||    
T  12598397 actctaagacttatgaatttctaagatgtgaaggttgataagaaatt 12598351  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 18362055 - 18362009
Alignment:
Q  25 taagacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    |||||||  ||||||||||||||||||  ||||||||||||||||||    
T  18362055 taagactctagaatttctaagatatgaaagtttataagaaattctaa 18362009  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 12222927 - 12222864
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatgcaca 86  Q
    ||||||||||||||||||| |||||||||||  ||| ||||| |||||||| ||| ||||||||||    
T  12222927 actctaagacttaagaattactaagatatgaaagttaataag-aattctaagtgt-ttgatgcaca 12222864  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 15467586 - 15467635
Alignment:
Q  25 taagacttaagaatttctaagatatgacggtttataagaaattctaattg 74  Q
    |||||||  ||||||||||||||||||  ||| |||||||||||||||||    
T  15467586 taagactctagaatttctaagatatgaaagttgataagaaattctaattg 15467635  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 15871568 - 15871508
Alignment:
Q  25 taagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatgcaca 86  Q
    |||||||||| ||||| || |||||||  |||||||||||||||||| |||| |||||||||    
T  15871568 taagacttaaaaatttataggatatgaaagtttataagaaattctaagtgtg-tgatgcaca 15871508  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 23087353 - 23087418
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatgcaca 86  Q
    ||||||||||||||||||||||||| |||||  |||| ||||| ||||||| ||| ||||||||||    
T  23087353 actctaagacttaagaatttctaaggtatgaaagtttgtaagatattctaagtgttttgatgcaca 23087418  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 32491280 - 32491215
Alignment:
Q  20 cactctaagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatgcaca 86  Q
    ||||||| |||||||||| |||||||||||||  |||| ||||||||||||| ||| ||||||||||    
T  32491280 cactctatgacttaagaaattctaagatatgaaagtttgtaagaaattctaagtgt-ttgatgcaca 32491215  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 24619321 - 24619362
Alignment:
Q  29 acttaagaatttctaagatatgacggtttataagaaattcta 70  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  24619321 acttaagaatttctaagatatgaaagtttataagaaattcta 24619362  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 13693476 - 13693513
Alignment:
Q  34 agaatttctaagatatgacggtttataagaaattctaa 71  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  13693476 agaatttctaagatatgaaagtttataagaaattctaa 13693513  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 8860341 - 8860385
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaa 65  Q
    ||||| |||| ||||||||||||||||||||  ||||||||||||    
T  8860341 actctgagacataagaatttctaagatatgaaagtttataagaaa 8860385  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 32468962 - 32468922
Alignment:
Q  27 agacttaagaatttctaagatatgacggtttataagaaatt 67  Q
    |||||||||||||| ||||||||||  ||||||||||||||    
T  32468962 agacttaagaatttataagatatgaaagtttataagaaatt 32468922  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 27939649 - 27939714
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattctaattgtgttgatgcaca 86  Q
    ||||||| |||||||||||||||||||||||  |||||||||||||| ||| ||| ||| ||||||    
T  27939649 actctaatacttaagaatttctaagatatgaaagtttataagaaattataagtgttttgttgcaca 27939714  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 26704301 - 26704349
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattct 69  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||||    
T  26704301 actctaagacttacgaatttctaagatatgaaagtttataagaaattct 26704349  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 25564363 - 25564316
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattc 68  Q
    ||||||||||||||||||||||| |||||||  |||| ||||||||||    
T  25564363 actctaagacttaagaatttctatgatatgaaagtttgtaagaaattc 25564316  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 40202819 - 40202777
Alignment:
Q  29 acttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    |||||||||||| ||||||||||  ||||||||||||||||||    
T  40202819 acttaagaatttttaagatatgaaagtttataagaaattctaa 40202777  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 24109839 - 24109791
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattct 69  Q
    ||||| ||||||||||||||||||||||| |  ||||||||| ||||||    
T  24109839 actctgagacttaagaatttctaagatataaaagtttataaggaattct 24109791  T

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Target: scaffold0340 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 17636 - 17680
Alignment:
Q  27 agacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  17636 agacttaagaatttctaagatatgaaagtttataagaaattctaa 17680  T

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Target: scaffold0859 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 2656 - 2702
Alignment:
Q  25 taagacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    |||||||| ||||||||||||||||||  ||| ||||||||||||||    
T  2656 taagactttagaatttctaagatatgaaagttgataagaaattctaa 2702  T

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Target: scaffold0043 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 2262 - 2216
Alignment:
Q  25 taagacttaagaatttctaagatatgacggtttataagaaattctaa 71  Q
    |||||||  ||||||||||||||||||  ||||||||||||||||||    
T  2262 taagactctagaatttctaagatatgaaagtttataagaaattctaa 2216  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 135831 - 135879
Alignment:
Q  21 actctaagacttaagaatttctaagatatgacggtttataagaaattct 69  Q
    ||||||||||||| |||||| ||||||||||  ||||||||||| ||||    
T  135831 actctaagacttacgaatttataagatatgaaagtttataagaatttct 135879  T

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