View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4282_low_9 (Length: 444)
Name: NF4282_low_9
Description: NF4282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4282_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 38356295 - 38355873
Alignment:
| Q |
1 |
gtaccatttaacagcaaaggatggaaatttacgttgccaaactatgctgctaaatggtaacattttaagtgtaaactcagctggtgatattcctctattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38356295 |
gtaccatttaacagcaaaggatggaaatttacgttgccaaactatgctgctaaatggtaacattttaagtgtaaactcagctggtgatattcctctattg |
38356196 |
T |
|
| Q |
101 |
aatcctatcaataaccagttgatcttacaactaactctacagaaatatgacaaagcnnnnnnnnnnnnnnttattgcatggaagtttggtgagattttga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38356195 |
aatcctatcaataaccagttgatcttacaactaactctacagaaatatgacaaagcaaaaaaatgaaaaattattgcatggaagtttggtgagattttga |
38356096 |
T |
|
| Q |
201 |
tgacacaagatgttgagattactcaggttgtcttctatggctgaaacttgataccaaagcatcaaaaactagtagtacaaataattgatttagtgctgtt |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38356095 |
tgacacaagatgttgagattactcaggttgtcttctatggctgaaacttgataccaaagcatcaaaagctagtagtacaaataattgatttagtgctgtt |
38355996 |
T |
|
| Q |
301 |
tgaatgcctctcataccgtagtggtttcaactccttttgaaatcaagttgttagctaactgcgatgtaatacttgtcacaaatattgaagccagaggcgt |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38355995 |
tgaatgcctctcataccgtagtggtttcaactccttttgaaatcaagttgttagctaactgcgatgtaatacttgtcacaaatattgaagccagaggcgt |
38355896 |
T |
|
| Q |
401 |
aagaatagacaccttaaatgatt |
423 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
38355895 |
aagaatagacaccttaaatgatt |
38355873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 277 - 424
Target Start/End: Complemental strand, 47976899 - 47976752
Alignment:
| Q |
277 |
acaaataattgatttagtgctgtttgaatgcctctcataccgtagtggtttcaactccttttgaaatcaagttgttagctaactgcgatgtaatacttgt |
376 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || |||| |||||| || |
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| T |
47976899 |
acaaataattgatttaatgctgttttgatgcctctcataccgtagtggtttcaactccttttgaaatcaagctgtcagctaattgtgatgcaatactagt |
47976800 |
T |
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| Q |
377 |
cacaaatattgaagccagaggcgtaagaatagacaccttaaatgattt |
424 |
Q |
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|||||||||||||||||| || | |||||||||||||| ||||||||| |
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| T |
47976799 |
cacaaatattgaagccaggggtggaagaatagacacctgaaatgattt |
47976752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 47989283 - 47989176
Alignment:
| Q |
1 |
gtaccatttaacagcaaaggatggaaatttacgttgccaaactatgctgctaaatggtaacattttaagtgtaaactcagctggtgatattcctctattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||| | |||||||| |||||| |||||| ||| ||||||||||| |||||| |||| |
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| T |
47989283 |
gtaccatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtgacattccttcattg |
47989184 |
T |
|
| Q |
101 |
aatcctat |
108 |
Q |
| |
|
|||||||| |
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|
| T |
47989183 |
aatcctat |
47989176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 47978925 - 47978820
Alignment:
| Q |
3 |
accatttaacagcaaaggatggaaatttacgttgccaaactatgctgctaaatggtaacattttaagtgtaaactcagctggtgatattcctctattgaa |
102 |
Q |
| |
|
||||||||||||||||||||||| |||||| | |||||| |||| | |||||||| ||||| |||||||||||||||||||||||||||||| | |||| |
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| T |
47978925 |
accatttaacagcaaaggatggagatttacatagccaaattatgttactaaatggaaacatcctaagtgtaaactcagctggtgatattcctccactgaa |
47978826 |
T |
|
| Q |
103 |
tcctat |
108 |
Q |
| |
|
|||||| |
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|
| T |
47978825 |
tcctat |
47978820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 47978299 - 47978205
Alignment:
| Q |
171 |
ttattgcatggaagtttggtgagattttgatgacacaagatgttgagattactcaggttgtcttctatggctgaaacttgataccaaagcatcaa |
265 |
Q |
| |
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|||||||| ||||||||||||| || || ||||| || |||||||||||| |||| ||||||||||||| |||||||||| || |||||||||| |
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| T |
47978299 |
ttattgcacggaagtttggtgaaatattcatgacttaaaatgttgagattattcagattgtcttctatggttgaaacttgaaactaaagcatcaa |
47978205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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