View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4283-Insertion-11 (Length: 108)
Name: NF4283-Insertion-11
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4283-Insertion-11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 5e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 5e-41
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 18930487 - 18930383
Alignment:
| Q |
4 |
aacaatttccttaactggccactaattaacatttgtcattcattcattattggtaaatggttggtacacatcactttctgcataattttcaaaaattaaa |
103 |
Q |
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| T |
18930487 |
aacagtttccttaacaggccactaattaacgtttctcattcattcattattggtaaatggttggtacacatcactttctgcataatttttaaaaattaaa |
18930388 |
T |
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| Q |
104 |
acatg |
108 |
Q |
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||||| |
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| T |
18930387 |
acatg |
18930383 |
T |
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Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 18935120 - 18935051
Alignment:
| Q |
39 |
tcattcattcattattggtaaatggttggtacacatcactttctgcataattttcaaaaattaaaacatg |
108 |
Q |
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| T |
18935120 |
tcattcattcattattggtaaatggttggtacacatcactttctgcataatttttaaaaattaaaacatg |
18935051 |
T |
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