View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4283-Insertion-19 (Length: 117)
Name: NF4283-Insertion-19
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4283-Insertion-19 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 6e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 52106850 - 52106740
Alignment:
| Q |
7 |
aaagtgctatgtacagtgaagattcctttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacacttcaactccggattttgtg |
106 |
Q |
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| T |
52106850 |
aaagtgctatgcacagtgaagattcttttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacactttaactcctgattttgtg |
52106751 |
T |
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| Q |
107 |
gaaaacaggtt |
117 |
Q |
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| T |
52106750 |
gaaaacaggtt |
52106740 |
T |
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Target: chr3 (Bit Score: 58; Significance: 7e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 33511693 - 33511600
Alignment:
| Q |
24 |
gaagattcctttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacacttcaactccggattttgtggaaaacaggtt |
117 |
Q |
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| T |
33511693 |
gaagattccttcccgagaaattcacgaagccgacgtgtcttgcgtataagaaaaagagaaacgcttcaactctggaatttatggaaaacaggtt |
33511600 |
T |
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Target: chr2 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 4891258 - 4891165
Alignment:
| Q |
24 |
gaagattcctttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacacttcaactccggattttgtggaaaacaggtt |
117 |
Q |
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| T |
4891258 |
gaagattccttctcgagaaattcacgaagcctacgtgtcttgcttataagaaaaagagaaacgcttcaactccagattttatggaaaacaggtt |
4891165 |
T |
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Target: chr5 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 35327360 - 35327268
Alignment:
| Q |
24 |
gaagattcctttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacacttcaactccggattttgtggaaaacaggt |
116 |
Q |
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| T |
35327360 |
gaagattccttctcgagaaattcacgaaaccggcgtgtcttgcgtataaggaaaagagcaacgcttcaactctggattttatggaaaacaggt |
35327268 |
T |
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