View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4283-Insertion-21 (Length: 222)
Name: NF4283-Insertion-21
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4283-Insertion-21 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39457988 - 39458209
Alignment:
| Q |
1 |
ctgagagccacgcatgtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccgg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39457988 |
ctgagagccacacatgtttccatctctttgagaggacgcttgtggttacaacaagtttggttggaagaaaataaagtatttcaaagagaattgaatccgg |
39458087 |
T |
|
| Q |
101 |
caagtcgctaattctgtctaccggcagtgaagattttttcatccttctctttttaagagagggagacgacatcatctttggcaaggtgaggaagatgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39458088 |
caagtcgctaattctgtctaccggcagtgaagattttttcatccttctctttttaagagagggagacgacatcatctttggcaaggtgaggaagatgcat |
39458187 |
T |
|
| Q |
201 |
acgatacatctattatttatat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39458188 |
acgatacatctattatttatat |
39458209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 39437268 - 39437114
Alignment:
| Q |
16 |
gtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattct |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||| | |||||||||||||| | ||||||||| || |
|
|
| T |
39437268 |
gtttccatctctttgagaggacacttgtggttgcagcaagtttggttggaagaaaatagagtatgtgacacagaattgaatccggtaggtcgctaatcct |
39437169 |
T |
|
| Q |
116 |
gtctaccggcagtgaagattttttcatccttctctttttaagagagggagacgacatc |
173 |
Q |
| |
|
||||| | ||||||||| ||| ||||||||||||| | |||| |||||||||| |
|
|
| T |
39437168 |
atctac---cttggaagattttctcaaccttctctttttatgtgaggaagacgacatc |
39437114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 39424245 - 39424091
Alignment:
| Q |
16 |
gtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattct |
115 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||| | |||||||||||||||| |||||| || || |
|
|
| T |
39424245 |
gtttccatctttttgagaggacacttgtggttgcagcaagtttggttggaagaaaatagagtatgtgacacagaattgaatccggcaggtcgcttatcct |
39424146 |
T |
|
| Q |
116 |
gtctaccggcagtgaagattttttcatccttctctttttaagagagggagacgacatc |
173 |
Q |
| |
|
||||| | ||||||||| ||| ||||||||||||| | |||| |||||||||| |
|
|
| T |
39424145 |
atctac---cttggaagattttctcaaccttctctttttatgtgaggaagacgacatc |
39424091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 39463533 - 39463687
Alignment:
| Q |
16 |
gtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattct |
115 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||| || |
|
|
| T |
39463533 |
gtttccatctctttgagagaacgcttgtcgttgcagcaagtttggttggaagaaaatagagtatgtggctgagaattgagtccggcaagtcgctaatcct |
39463632 |
T |
|
| Q |
116 |
gtctaccggcagtgaagattttttcatccttctctttttaagagagggagacgacatc |
173 |
Q |
| |
|
||||| | ||||||||| ||| ||||||||||||| | |||| | |||||||| |
|
|
| T |
39463633 |
atctac---cttggaagattttctcaaccttctctttttatgtgaggaatacgacatc |
39463687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 47369008 - 47369115
Alignment:
| Q |
16 |
gtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattct |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||| | ||||||||| |||| | || || ||| |||| || ||||| |||| |||||| ||||| |
|
|
| T |
47369008 |
gtttccatctctttgagagaacgcttgtggttgcagcgaatttggttgggtgaaaggagagaatatgacagagtatcgaatcaggcatgtcgctgattct |
47369107 |
T |
|
| Q |
116 |
gtctaccg |
123 |
Q |
| |
|
||||||| |
|
|
| T |
47369108 |
atctaccg |
47369115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 19981488 - 19981551
Alignment:
| Q |
16 |
gtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtat |
79 |
Q |
| |
|
||||||||||||||||||||||||||| | | |||| ||||||||||| ||||| ||||||| |
|
|
| T |
19981488 |
gtttccatctctttgagaggacgcttgggatcgcagcgagtttggttgggagaaatgaaagtat |
19981551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 38490501 - 38490615
Alignment:
| Q |
1 |
ctgagagccacgcatgtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccgg |
100 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| ||||||| | | |||||| |||||||| |||||| | || || ||| |||| || ||||| || |
|
|
| T |
38490501 |
ctgagagccacaccgatttccatctctttgagaggaagcttgtgatgaaagcaagattggttgggagaaaagagagaatgtgacagagtatcgaatcagg |
38490600 |
T |
|
| Q |
101 |
caagtcgctaattct |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38490601 |
caagtcgctaattct |
38490615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 48445194 - 48445119
Alignment:
| Q |
40 |
ttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattct |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | || || ||| ||| ||||||||||||| |||||||||||| |
|
|
| T |
48445194 |
ttgtggttacagcaagtttggttgggagaaaagagagaatatgactgagtattgaatccggcatgtcgctaattct |
48445119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 7176165 - 7176218
Alignment:
| Q |
17 |
tttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaa |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| || |||||||| |
|
|
| T |
7176165 |
tttccatctctttgagaggacgcttgtggttgcagctagtttagtcggaagaaa |
7176218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 27816266 - 27816362
Alignment:
| Q |
19 |
tccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattct |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||||||||||||| ||| | || || ||| ||| |||||||| || || ||||||||||| |
|
|
| T |
27816266 |
tccatctctttgagaggatgcttgtggtcgcagtgagtttggttggaattaaagagaggatgtgactgagtattgaatcaggtaactcgctaattct |
27816362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 43098466 - 43098352
Alignment:
| Q |
1 |
ctgagagccacgcatgtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccgg |
100 |
Q |
| |
|
|||||||||| | |||| |||||| |||||||||||||||||| || | |||||||||||||| | ||| | || || ||| | ||||||||||| || |
|
|
| T |
43098466 |
ctgagagccatacctgttcccatctttttgagaggacgcttgtgattgccgcaagtttggttgggacgaaagagagaatgtgacacagaattgaatctgg |
43098367 |
T |
|
| Q |
101 |
caagtcgctaattct |
115 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
43098366 |
caaatagctaattct |
43098352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University