View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4283-Insertion-24 (Length: 207)
Name: NF4283-Insertion-24
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4283-Insertion-24 |
 | |
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| [»] chr2 (7 HSPs) |
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| [»] chr6 (7 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0713 (1 HSPs) |
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| [»] scaffold0406 (1 HSPs) |
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| [»] scaffold2168 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-106; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 45330728 - 45330929
Alignment:
| Q |
6 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45330728 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
45330827 |
T |
|
| Q |
106 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
205 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45330828 |
attagtaatgctcagatacgatgtcggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgaattgatgac |
45330927 |
T |
|
| Q |
206 |
ga |
207 |
Q |
| |
|
|| |
|
|
| T |
45330928 |
ga |
45330929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 31713040 - 31713241
Alignment:
| Q |
6 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
105 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31713040 |
tatatgttatcaataatgcgataacacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
31713139 |
T |
|
| Q |
106 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |
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|
| T |
31713140 |
attattaatgctcagatacgatgccggatgcttcacatgcttctcccgggatggttggagagcacgcttagttgattcatcgtaactgtgagttggtgac |
31713239 |
T |
|
| Q |
206 |
ga |
207 |
Q |
| |
|
|| |
|
|
| T |
31713240 |
ga |
31713241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 39156069 - 39155868
Alignment:
| Q |
6 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
105 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39156069 |
tatatgttatcaataatgcaataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
39155970 |
T |
|
| Q |
106 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| || |
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|
| T |
39155969 |
attattaatgctcagatacgatgccggatgcttcacatgcttctcccgggatggttggagagcacgcttagttgattcatcgtaactgtgagttgataac |
39155870 |
T |
|
| Q |
206 |
ga |
207 |
Q |
| |
|
|| |
|
|
| T |
39155869 |
ga |
39155868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 10414748 - 10414838
Alignment:
| Q |
117 |
tcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
10414748 |
tcagagacgatgtcggacgcttcacatgcttctcccggggtgattggagagcacgcttagtcgattcgtcataactgtgagttgatgacga |
10414838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 2587112 - 2587188
Alignment:
| Q |
131 |
ggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| || |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2587112 |
ggacgcttcacatgcttctctaggagtggttggagatcaaacttagttgattcgtcataactgtgagttgatgacga |
2587188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 44314724 - 44314852
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
177 |
Q |
| |
|
||||||||||||||| || ||||| |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
44314724 |
gaatgagtttctaattcataagaaaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
44314822 |
T |
|
| Q |
178 |
cgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44314823 |
tgattcgtcgtaactgtgagttgatgacga |
44314852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 44322903 - 44323031
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
177 |
Q |
| |
|
||||||||||||||| || ||||| |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
44322903 |
gaatgagtttctaattcataagaaaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
44323001 |
T |
|
| Q |
178 |
cgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44323002 |
tgattcgtcgtaactgtgagttgatgacga |
44323031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 8e-94; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 27683190 - 27683391
Alignment:
| Q |
6 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27683190 |
tatatgttatcaataatgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
27683289 |
T |
|
| Q |
106 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
27683290 |
attattaatgctcagatacgatgccggatgcttcacatgcttctcccgggatggttggagagcacgcttagttgattcatcgtaacagtgagttgatgac |
27683389 |
T |
|
| Q |
206 |
ga |
207 |
Q |
| |
|
|| |
|
|
| T |
27683390 |
ga |
27683391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 27690511 - 27690712
Alignment:
| Q |
6 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27690511 |
tatatgttatcaataatgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
27690610 |
T |
|
| Q |
106 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
27690611 |
attattaatgctcagatacgatgccggatgcttcacatgcttctcccgggatggttggagagcacgcttagttgattcatcgtaacagtgagttgatgac |
27690710 |
T |
|
| Q |
206 |
ga |
207 |
Q |
| |
|
|| |
|
|
| T |
27690711 |
ga |
27690712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 17354576 - 17354777
Alignment:
| Q |
6 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17354576 |
tatatgttatcaataatgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
17354675 |
T |
|
| Q |
106 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||| || |
|
|
| T |
17354676 |
attattaatgctcagatacgatgccggatgcttcacatgcttctcccgggatggttggagagcactcttagttgattcttcgtaactgtgagttgattac |
17354775 |
T |
|
| Q |
206 |
ga |
207 |
Q |
| |
|
|| |
|
|
| T |
17354776 |
ga |
17354777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 13143245 - 13143044
Alignment:
| Q |
6 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
105 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13143245 |
tatatgttatcgataatgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctgaaatgagtttctaatatatgtgaaaac |
13143146 |
T |
|
| Q |
106 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
205 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
13143145 |
attattaatgttcagatacgatgccagacgcttcacatgcttctcccaggatggttggagagcacgcttagttgattcgtcgtaacagtgagttgatgac |
13143046 |
T |
|
| Q |
206 |
ga |
207 |
Q |
| |
|
|| |
|
|
| T |
13143045 |
ga |
13143044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 22012797 - 22012925
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
177 |
Q |
| |
|
||||||||||||||| || ||||| |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
22012797 |
gaatgagtttctaattcataagaaaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
22012895 |
T |
|
| Q |
178 |
cgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22012896 |
tgattcgtcgtaactgtgagttgatgacga |
22012925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 25479517 - 25479446
Alignment:
| Q |
131 |
ggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgat |
202 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| || |||||| |||||||| ||||||||||||||| |
|
|
| T |
25479517 |
ggacgcttcacatgcttctcttggagtggttggagatcaaacttagttgattcgtcataactgtgagttgat |
25479446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 27526076 - 27526204
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
177 |
Q |
| |
|
||||||||||||||| ||| || || |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
27526076 |
gaatgagtttctaattcatgagagaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
27526174 |
T |
|
| Q |
178 |
cgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
27526175 |
tgatttgtcgtaactgtgagttgatgacga |
27526204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 29290328 - 29290240
Alignment:
| Q |
119 |
agatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | || || |||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29290328 |
agatacaatgccggacgcttcacatgcttctcccagggtgattggagagttcgcttagtcgattcgtcataactgtgagttgatgacga |
29290240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 14649114 - 14649242
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
177 |
Q |
| |
|
||||||||||||||| ||| || || |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
14649114 |
gaatgagtttctaattcatgagagaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
14649212 |
T |
|
| Q |
178 |
cgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14649213 |
tgattcgtcgtaactgtgagttgatgacga |
14649242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 14658904 - 14659032
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
177 |
Q |
| |
|
||||||||||||||| ||| || || |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
14658904 |
gaatgagtttctaattcatgagagaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
14659002 |
T |
|
| Q |
178 |
cgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14659003 |
tgattcgtcgtaactgtgagttgatgacga |
14659032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 16099656 - 16099745
Alignment:
| Q |
113 |
atgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgat |
202 |
Q |
| |
|
||||||||||| | | |||| |||||||||||||||| | | || ||||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
16099656 |
atgctcagatatggcgtcggatgcttcacatgcttctccctgagtgattggagagcacacttagttgattcgtcataactgtgagttgat |
16099745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 17654678 - 17654590
Alignment:
| Q |
119 |
agatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |||||||||||||||||||||||| |||| |
|
|
| T |
17654678 |
agatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagttgattcgtcgtaactgtgagttgataacga |
17654590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 28802420 - 28802548
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtc |
178 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| | ||||||||||| || |||||||||||||||||||||| | || ||||| ||||||| ||||| |
|
|
| T |
28802420 |
gaatgagtttctaattcatgagaaaatattattgatgctcagatatgacgccggacgcttcacatgcttctttaggagtggttagagagcaaacttagct |
28802519 |
T |
|
| Q |
179 |
gattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |
|
|
| T |
28802520 |
gattcgtcataacagtgagttgatgacga |
28802548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 6023471 - 6023421
Alignment:
| Q |
157 |
tggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
|||||||||| || |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6023471 |
tggttggagaacatacttagttgattcgtcgtaactgtgagttgatgacga |
6023421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 34378226 - 34378296
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttct |
149 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| | ||||||||||| || | |||||||||||||||||||| |
|
|
| T |
34378226 |
gaatgagtttctaattcatgagaaaatattattgatgctcagatatgacgacggacgcttcacatgcttct |
34378296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 11513941 - 11513847
Alignment:
| Q |
113 |
atgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||||| || |||||||||||||| |||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
11513941 |
atgctcagatatggcgccggatgcttcacatgcttcttcatgggtggttggagagcacacttagttgattcgttgtaattgtgagttgatgacga |
11513847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 54353107 - 54353032
Alignment:
| Q |
130 |
cggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
|||| |||||||||||||||| ||| || ||||||||||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
54353107 |
cggatgcttcacatgcttctcccggagtgattggagagcacaattagttgattcgtc--aactgtgagttgatgacga |
54353032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 5520775 - 5520647
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtc |
178 |
Q |
| |
|
|||||| |||||||| ||| ||||| |||| | |||| ||||| || ||||| ||||||||||||||| |||| ||||| ||||||| |||||| |
|
|
| T |
5520775 |
gaatgattttctaattcatgagaaaatattattggtgcttagatatgacgccgggcgcttcacatgcttccttcggagtggttagagagcaaacttagtt |
5520676 |
T |
|
| Q |
179 |
gattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||| || |||||||||||||||||||| |
|
|
| T |
5520675 |
gattcatcataactgtgagttgatgacga |
5520647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 5735628 - 5735558
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttct |
149 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| | ||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
5735628 |
gaatgagtttctaattcatgagaaaatattattgatgttcagatatgacgccggacgcttcacatgcttct |
5735558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 5772740 - 5772670
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttct |
149 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| | ||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
5772740 |
gaatgagtttctaattcatgagaaaatattattgatgttcagatatgacgccggacgcttcacatgcttct |
5772670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 28059566 - 28059513
Alignment:
| Q |
154 |
ggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||||||||||| || | ||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
28059566 |
ggatggttggagaacaagtttagttgattcgtcgtatcggtgagttgatgacga |
28059513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 28069991 - 28069938
Alignment:
| Q |
154 |
ggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||||||||||| || | ||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
28069991 |
ggatggttggagaacaagtttagttgattcgtcgtatcggtgagttgatgacga |
28069938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 3945 - 4073
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
177 |
Q |
| |
|
||||||||||||||| ||| || || |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
3945 |
gaatgagtttctaattcatgagagaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
4043 |
T |
|
| Q |
178 |
cgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |
|
|
| T |
4044 |
tgattcgtcgtaactatgagttgataacga |
4073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 2548 - 2620
Alignment:
| Q |
135 |
gcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacga |
207 |
Q |
| |
|
||||||||||||||||| || |||||||||| || | |||| |||||||| ||||||||||||||| |||| |
|
|
| T |
2548 |
gcttcacatgcttctctaggagtggttggagatcaaacatagttgattcgtcataactgtgagttgataacga |
2620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2168 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold2168
Description:
Target: scaffold2168; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 25 - 97
Alignment:
| Q |
79 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctct |
151 |
Q |
| |
|
||||||||||||||| || ||||| |||| | ||| ||||||| || ||| |||||||||||||||||||| |
|
|
| T |
25 |
gaatgagtttctaattcataagaaaatattattgatgttcagatatgacgccagacgcttcacatgcttctct |
97 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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