View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4283-Insertion-7 (Length: 204)
Name: NF4283-Insertion-7
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4283-Insertion-7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 42041684 - 42041483
Alignment:
| Q |
4 |
agaatccacaatccatctccacaaatcaaaccagaagcaactgcaggaaccatcaaaccagcttcctttttgttcagcatatgccatgcaaacacaacca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42041684 |
agaatccacaatccatctccacaaatcaaaccagaagcaactgcaggaaccatcaaaccagcttcctttttgttcagcatatgccatgcaaacacaacta |
42041585 |
T |
|
| Q |
104 |
aactgcccacacacatatcaatggcaaagtagccaccaacta-aaaaggcacagccatagccattggaagtggaatccatttcccaacttgttgtgggcc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42041584 |
aactgcccacacacatatcaatggcaaagtagccaccaactaaaaaaggcacagccatagccattggaagtggaatccatttcccaacttgttgtgggcc |
42041485 |
T |
|
| Q |
203 |
aa |
204 |
Q |
| |
|
|| |
|
|
| T |
42041484 |
aa |
42041483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 4807 - 4647
Alignment:
| Q |
16 |
ccatctccacaaatcaaaccagaagcaactgcaggaaccatcaaaccagcttcctttttgttcagcatatgccatgcaaacacaaccaaactgcccacac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||||||||| ||||||| ||| |||| | | ||| ||||||| |||||||| ||||||| |
|
|
| T |
4807 |
ccatctccacaaatcaaaccagaagcaacagctggaatcatcaaacctgcttcctcttttttcatccaactccaaacaaacactaccaaacttcccacac |
4708 |
T |
|
| Q |
116 |
acatatcaatggcaaagtagccaccaacta-aaaaggcacagccatagccattggaagtgg |
175 |
Q |
| |
|
|||| |||||||||||||| |||| || | |||||| |||||||| |||||||||||||| |
|
|
| T |
4707 |
acatgtcaatggcaaagtaagcacctacaacaaaaggtacagccattgccattggaagtgg |
4647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 399969 - 400129
Alignment:
| Q |
16 |
ccatctccacaaatcaaaccagaagcaactgcaggaaccatcaaaccagcttcctttttgttcagcatatgccatgcaaacacaaccaaactgcccacac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||||||||| ||||||| ||| |||| | | ||| ||||||| |||||||| ||||||| |
|
|
| T |
399969 |
ccatctccacaaatcaaaccagaagcaacagctggaatcatcaaacctgcttcctcttttttcatccaactccaaacaaacactaccaaacttcccacac |
400068 |
T |
|
| Q |
116 |
acatatcaatggcaaagtagccaccaacta-aaaaggcacagccatagccattggaagtgg |
175 |
Q |
| |
|
|||| |||||||||||||| |||| || | |||||| |||||||| |||||||||||||| |
|
|
| T |
400069 |
acatgtcaatggcaaagtaagcacctacaacaaaaggtacagccattgccattggaagtgg |
400129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 407647 - 407807
Alignment:
| Q |
16 |
ccatctccacaaatcaaaccagaagcaactgcaggaaccatcaaaccagcttcctttttgttcagcatatgccatgcaaacacaaccaaactgcccacac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||||||||| |||||||| || |||| | | ||| ||||||| |||||||| ||||||| |
|
|
| T |
407647 |
ccatctccacaaatcaaaccagaagcaacagctggaatcatcaaacctgcttccttgtttttcatccaactccaaacaaacactaccaaactccccacac |
407746 |
T |
|
| Q |
116 |
acatatcaatggcaaagtagccaccaacta-aaaaggcacagccatagccattggaagtgg |
175 |
Q |
| |
|
|||| |||||||||||||| |||| || | |||||| |||||||| |||||||||||||| |
|
|
| T |
407747 |
acatgtcaatggcaaagtaagcacctacaacaaaaggtacagccattgccattggaagtgg |
407807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 425743 - 425903
Alignment:
| Q |
16 |
ccatctccacaaatcaaaccagaagcaactgcaggaaccatcaaaccagcttcctttttgttcagcatatgccatgcaaacacaaccaaactgcccacac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||||||||| ||||||| ||| |||| | | ||| ||||||| |||||||| ||||||| |
|
|
| T |
425743 |
ccatctccacaaatcaaaccagaagcaacagctggaatcatcaaacctgcttcctcttttttcatccaactccaaacaaacactaccaaactccccacac |
425842 |
T |
|
| Q |
116 |
acatatcaatggcaaagtagccaccaacta-aaaaggcacagccatagccattggaagtgg |
175 |
Q |
| |
|
|||| |||||||||||||| |||| || | |||||| |||||||| |||||||||||||| |
|
|
| T |
425843 |
acatgtcaatggcaaagtaagcacctacaacaaaaggtacagccattgccattggaagtgg |
425903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 437958 - 438118
Alignment:
| Q |
16 |
ccatctccacaaatcaaaccagaagcaactgcaggaaccatcaaaccagcttcctttttgttcagcatatgccatgcaaacacaaccaaactgcccacac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||||||||| |||||||| || |||| | | ||| ||||||| |||||||| ||||||| |
|
|
| T |
437958 |
ccatctccacaaatcaaaccagaagcaacagctggaatcatcaaacctgcttccttgtttttcatccaactccaaacaaacactaccaaactccccacac |
438057 |
T |
|
| Q |
116 |
acatatcaatggcaaagtagccaccaacta-aaaaggcacagccatagccattggaagtgg |
175 |
Q |
| |
|
|||| |||||||||||||| |||| || | |||||| |||||||| |||||||||||||| |
|
|
| T |
438058 |
acatgtcaatggcaaagtaagcacctacaacaaaaggtacagccattgccattggaagtgg |
438118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University