View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4283_high_11 (Length: 246)
Name: NF4283_high_11
Description: NF4283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4283_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 31406539 - 31406740
Alignment:
| Q |
1 |
aatcagcagcagctaggacaagctcagggtgaatatttcttgcatgatccacaacatttggaagtcccagtgctctcaaggccaaatgagctgccttctg |
100 |
Q |
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| T |
31406539 |
aatcagcagcagctaggacaagctcagggtgaatatttcctgcatgatccacagcatttggaagtcccagtgctctcaaggccaaatgagctgccttctg |
31406638 |
T |
|
| Q |
101 |
tcctgaaatcatcattgctccaaatgttggaccctgcaatttcaacaccaaaacagttaataatggccaattgatatatgaaaacaaggtatttcaactt |
200 |
Q |
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| T |
31406639 |
tcctgaaatcatcattgctccaaatgttggaccctgcaatttcaacaccaaaacagttaataatggccaatt-atatatgaaaacaaggtatttcaactt |
31406737 |
T |
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| Q |
201 |
cta |
203 |
Q |
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||| |
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| T |
31406738 |
cta |
31406740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 31406777 - 31406807
Alignment:
| Q |
201 |
ctagcgcattacatgaatctcagttggttat |
231 |
Q |
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| T |
31406777 |
ctagcgcattacatgaatctcagttggttat |
31406807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 47480594 - 47480653
Alignment:
| Q |
76 |
tcaaggccaaatgagctgccttctgtcctgaaatcatcattgctccaaatgttggaccct |
135 |
Q |
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|||| |||||||| || || ||||||||||| ||||||||||| |||||||||||||||| |
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| T |
47480594 |
tcaatgccaaatgtgcagctttctgtcctgatatcatcattgccccaaatgttggaccct |
47480653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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